NC_041161.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_041161.1 Plantago depressa chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 164617
Tables: 1
This is table 1 of 1 ( 41 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
7893--7969 38 2.1 37 90 4 120 44 9 19 27 1.81
12000--12025 13 2.0 13 100 0 52 38 23 0 38 1.55
20398--20422 12 2.1 12 100 0 50 28 16 16 40 1.89
29400--29447 16 3.0 16 100 0 96 43 12 18 25 1.85
55602--55662 31 2.0 31 83 0 77 47 13 13 26 1.79
55646--55810 41 4.1 39 79 11 181 41 10 16 31 1.82
55651--55796 41 3.6 41 87 4 190 41 10 17 31 1.83
55727--55796 23 3.3 23 62 25 62 41 11 15 31 1.83
55990--56033 19 2.2 20 96 4 81 27 27 4 40 1.75
56925--57132 15 13.9 15 83 4 258 31 11 24 33 1.90
56910--57132 45 5.0 45 85 1 295 32 11 23 32 1.91
59345--59381 17 2.2 17 100 0 74 10 16 0 72 1.10
64178--64214 16 2.2 17 90 4 58 32 5 10 51 1.60
66317--66433 60 2.0 60 91 0 189 51 15 11 22 1.74
68034--68061 10 2.8 10 100 0 56 17 10 0 71 1.14
73857--73897 21 1.9 22 85 5 57 48 4 12 34 1.62
84854--84900 23 2.0 23 87 0 67 48 10 10 29 1.71
85428--85467 10 4.0 10 93 6 64 72 0 10 17 1.11
85428--85469 21 2.0 22 90 4 68 71 0 9 19 1.13
87421--87499 21 3.6 21 76 11 70 11 25 7 55 1.61
89807--89866 18 3.7 18 68 25 60 25 15 33 26 1.95
93467--93527 31 2.0 31 96 0 113 27 9 22 39 1.86
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
101318--101358 20 2.0 20 100 0 82 46 14 4 34 1.66
106764--106816 27 2.0 25 89 7 79 56 3 13 26 1.54
109002--109058 15 3.8 15 95 0 105 59 8 19 12 1.58
110431--110460 9 3.2 9 95 4 51 66 0 20 13 1.24
119067--119094 14 2.0 14 100 0 56 50 21 0 28 1.49
122967--123008 20 2.0 21 86 13 61 54 23 0 21 1.44
124774--124819 24 1.9 24 100 0 92 54 6 17 21 1.65
125186--125217 16 2.0 16 93 0 55 37 21 12 28 1.90
128457--128484 14 2.0 14 100 0 56 28 0 21 50 1.49
137091--137120 9 3.2 9 95 4 51 13 20 0 66 1.24
138471--138548 15 5.2 15 85 3 59 8 21 11 57 1.61
138493--138549 15 3.8 15 95 0 105 12 19 8 59 1.58
146193--146233 20 2.0 20 100 0 82 34 4 14 46 1.66
154024--154084 31 2.0 31 96 0 113 39 22 9 27 1.86
157689--157744 18 3.4 18 70 27 61 26 33 16 23 1.95
160070--160123 21 2.6 21 80 11 65 59 9 22 9 1.57
162084--162123 10 4.0 10 90 9 64 17 10 0 72 1.11
162082--162123 21 2.0 22 90 4 68 19 9 0 71 1.13
162651--162697 23 2.0 23 87 0 67 29 10 10 48 1.71
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Tables: 1
The End!