NC_041294.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_041294.1 Celosia argentea voucher 13CS6757(KUN) plastid, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 153673
Tables: 1
This is table 1 of 1 ( 41 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
5065--5132 12 6.0 12 80 13 90 55 0 8 35 1.31
5081--5134 10 5.0 10 75 16 54 53 0 9 37 1.33
5069--5134 22 3.0 22 100 0 132 54 0 9 36 1.32
8606--8643 15 2.3 18 86 13 55 60 5 0 34 1.19
8747--8801 10 5.3 10 79 16 67 34 0 0 65 0.93
8751--8803 16 3.4 15 80 10 70 32 0 0 67 0.91
8752--8802 8 6.5 8 78 10 52 33 0 0 66 0.92
8851--8875 12 2.1 12 100 0 50 32 0 8 60 1.26
12713--12750 17 2.2 17 100 0 76 36 5 0 57 1.21
12763--12804 12 3.6 12 80 6 59 54 0 0 45 0.99
12762--12807 23 2.0 23 100 0 92 56 0 0 43 0.99
13432--13473 9 4.7 9 85 14 52 66 0 0 33 0.92
13432--13476 4 10.2 4 82 17 54 68 0 0 31 0.89
13442--13473 13 2.5 13 100 0 64 68 0 0 31 0.90
31958--31983 13 2.0 13 100 0 52 30 15 0 53 1.42
32021--32082 17 3.3 18 82 13 72 40 6 0 53 1.27
43173--43213 15 2.7 15 92 0 64 43 17 4 34 1.70
46144--46190 23 2.0 23 100 0 94 17 8 4 70 1.29
58102--58162 26 2.3 26 91 0 104 49 11 6 32 1.65
60064--60106 18 2.2 20 80 20 63 65 0 18 16 1.28
60070--60106 18 2.1 18 100 0 74 64 0 18 16 1.29
63642--63667 13 2.0 13 100 0 52 30 7 0 61 1.24
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
64624--64651 14 2.0 14 100 0 56 21 0 7 71 1.09
66353--66392 20 2.0 20 100 0 80 55 0 15 30 1.41
68216--68254 20 2.0 20 100 0 78 25 17 0 56 1.41
68738--68768 15 2.1 15 100 0 62 54 0 6 38 1.26
72196--72221 13 2.0 13 100 0 52 53 0 7 38 1.30
86473--86497 12 2.1 12 100 0 50 44 0 24 32 1.54
89476--89532 24 2.4 24 100 0 114 15 24 12 47 1.80
91893--91953 18 3.4 18 90 0 104 26 11 26 36 1.90
91884--91955 36 2.0 36 91 0 117 27 9 25 37 1.87
99253--99290 18 2.1 18 95 0 67 26 5 7 60 1.46
110365--110406 22 1.9 22 85 9 59 42 14 14 28 1.84
113045--113072 14 2.0 14 100 0 56 50 14 7 28 1.69
114600--114663 21 3.0 21 100 0 128 14 25 42 18 1.88
119471--119523 17 3.1 17 94 0 97 54 0 9 35 1.33
139518--139555 18 2.1 18 95 0 67 60 7 5 26 1.46
146853--146924 36 2.0 36 91 0 117 37 25 9 27 1.87
146855--146915 18 3.4 18 90 0 104 36 26 11 26 1.90
149276--149332 24 2.4 24 100 0 114 47 12 24 15 1.80
152311--152335 12 2.1 12 100 0 50 32 24 0 44 1.54
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Tables: 1
The End!