NC_041440.1.fas.2.7.7.80.10.50.500.1.html Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: NC_041440.1 Calotropis procera chloroplast, complete genome Parameters: 2 7 7 80 10 50 500 Length: 166010 Tables: 1 2 This is table 1 of 2 ( 149 repeats found ) Click on indices to view alignment Table Explanation ----------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- --------- Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 90--114 12 2.1 12 100 0 50 16 8 0 76 1.02 172--205 11 3.3 11 88 12 54 32 0 8 58 1.29 168--205 20 1.9 20 94 0 67 36 0 7 55 1.29 251--293 20 2.2 20 87 4 61 41 4 0 53 1.21 3320--3349 15 2.0 15 100 0 60 46 13 6 33 1.69 4443--4467 12 2.1 12 100 0 50 48 16 16 20 1.82 5610--5649 20 2.0 20 100 0 80 10 10 20 60 1.57 6400--6429 14 2.1 14 100 0 60 40 6 0 53 1.27 6782--6808 12 2.2 12 100 0 54 51 0 0 48 1.00 7460--7492 17 1.9 17 93 0 57 33 12 21 33 1.90 7676--7814 62 2.3 62 98 1 271 33 12 5 48 1.64 7844--7876 15 2.2 15 100 0 66 33 6 6 54 1.50 8011--8050 8 5.3 7 85 14 53 52 17 0 30 1.45 8011--8050 15 2.7 15 92 7 64 52 17 0 30 1.45 9066--9097 16 2.0 16 100 0 64 43 6 6 43 1.54 11874--11903 1 30.0 1 93 0 51 96 0 3 0 0.21 14826--14852 12 2.2 12 100 0 54 25 14 7 51 1.68 17580--17621 21 2.0 21 100 0 84 23 9 19 47 1.78 20603--20666 33 2.0 33 93 3 112 48 0 17 34 1.47 32270--32308 21 1.9 20 89 5 60 28 5 10 56 1.54 35117--35146 15 2.0 15 100 0 60 40 0 6 53 1.27 36976--37016 19 2.2 19 86 0 55 31 17 0 51 1.46 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 37011--37062 16 3.4 16 74 12 56 59 1 5 32 1.32 37167--37202 18 2.0 18 100 0 72 44 5 27 22 1.75 37273--37306 16 2.1 16 100 0 68 17 11 5 64 1.45 37637--37682 19 2.3 20 92 7 76 39 2 8 50 1.46 37624--37687 21 3.1 21 77 2 67 37 4 9 48 1.56 37676--37717 18 2.3 19 91 8 77 47 9 4 38 1.57 37713--37745 12 2.7 13 90 9 52 45 12 0 42 1.41 38063--38088 13 2.0 13 100 0 52 46 0 23 30 1.53 48219--48249 15 2.1 15 93 0 53 35 6 16 41 1.74 48669--48701 14 2.4 14 94 0 57 75 0 0 24 0.80 48758--48787 14 2.1 14 100 0 60 46 6 20 26 1.75 48892--48931 20 2.0 20 85 9 55 47 15 2 35 1.58 49438--49466 14 2.1 14 100 0 58 55 6 0 37 1.27 52623--52710 13 6.9 13 72 23 71 39 1 0 59 1.05 52595--52699 50 2.1 50 89 7 160 39 0 0 60 1.04 52583--52692 21 5.5 21 65 25 76 36 0 0 62 1.01 52675--52710 14 2.7 13 91 8 63 47 0 0 52 1.00 52675--52758 13 5.8 14 72 22 59 51 0 0 48 1.00 52688--52744 21 2.8 20 82 15 73 52 0 0 47 1.00 52702--52770 13 5.0 13 80 19 70 53 0 0 46 1.00 52688--52770 40 2.0 42 82 15 102 51 0 0 48 1.00 52702--52770 27 2.5 28 86 11 99 53 0 0 46 1.00 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 52720--52770 7 7.0 8 72 28 51 50 0 0 49 1.00 53925--53980 27 2.1 27 100 0 112 46 21 7 25 1.76 57654--57701 13 3.7 13 85 0 51 31 8 2 58 1.39 57785--57841 4 14.2 4 78 10 55 31 0 0 68 0.90 57784--57846 21 2.9 21 85 4 81 36 0 0 63 0.95 57811--57844 17 2.0 17 100 0 68 29 0 0 70 0.87 58385--58412 14 2.0 14 100 0 56 35 21 14 28 1.92 59358--59408 16 3.3 15 83 8 66 37 5 11 45 1.65 62219--62277 26 2.2 26 96 3 109 44 6 10 38 1.65 64469--64528 26 2.6 21 75 22 66 28 21 3 46 1.67 64459--64521 26 2.4 26 97 0 117 30 20 4 44 1.72 65230--65274 21 2.1 22 95 4 83 48 4 22 24 1.68 65228--65295 21 2.9 23 80 17 77 48 4 23 23 1.69 65276--65367 48 1.9 48 93 0 157 35 10 25 28 1.89 65278--65357 27 3.2 27 62 26 66 36 11 23 28 1.89 65438--65715 21 13.2 21 94 0 412 40 6 26 26 1.79 65438--67412 42 43.7 42 73 17 751 42 7 23 26 1.80 65438--67412 63 29.2 63 70 20 751 42 7 23 26 1.80 65810--66435 21 27.2 21 75 19 433 45 5 24 24 1.75 66024--66419 48 8.4 48 93 3 630 46 4 25 23 1.70 66530--66608 21 3.8 21 85 6 90 39 8 25 26 1.85 66657--66878 27 8.7 27 82 10 261 50 3 24 22 1.65 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 66703--67017 21 13.8 22 86 10 315 46 4 25 23 1.70 66998--67089 48 1.9 48 88 0 139 39 10 25 25 1.88 67160--67412 21 11.5 21 80 11 231 41 3 28 26 1.71 67206--67286 27 3.0 27 90 0 126 48 2 27 22 1.63 67828--67985 18 9.1 18 67 22 79 67 11 12 8 1.41 67809--67981 30 5.8 30 99 0 328 67 11 13 8 1.43 67809--67963 12 12.9 12 79 0 121 67 10 13 8 1.43 75676--75725 25 2.0 25 100 0 100 40 8 16 36 1.77 76029--76068 20 2.0 20 100 0 80 40 15 0 45 1.46 76032--76096 20 3.2 20 85 8 78 50 12 0 36 1.40 76114--76148 17 2.1 17 100 0 70 48 11 5 34 1.63 76108--76150 17 2.4 19 80 15 63 53 9 6 30 1.59 76242--76270 13 2.2 13 100 0 58 48 0 0 51 1.00 76800--76842 18 2.5 17 92 3 68 20 4 6 67 1.33 76870--76894 12 2.1 12 100 0 50 32 0 8 60 1.26 77720--77754 17 2.1 17 94 0 61 40 5 14 40 1.69 78903--78964 8 8.0 8 76 18 51 61 0 11 27 1.30 78930--78975 17 2.6 18 89 10 76 67 0 15 17 1.24 79503--79544 18 2.3 18 83 0 57 30 35 11 21 1.90 84956--84987 16 2.0 16 100 0 64 31 12 25 31 1.92 89363--89522 18 9.4 18 86 11 239 16 28 10 45 1.79 89361--89512 9 16.9 9 72 18 104 17 26 10 45 1.80 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 93731--93780 18 2.7 18 96 3 91 44 0 0 56 0.99 93731--93821 10 9.1 10 79 12 80 45 0 0 54 0.99 95991--96065 23 3.2 23 62 20 55 37 8 13 41 1.74 95965--96108 48 3.0 48 98 0 279 34 10 14 40 1.80 96095--96187 14 7.0 14 78 11 106 32 7 17 43 1.77 96091--96193 51 2.0 51 98 0 197 34 6 15 42 1.74 96365--96670 153 2.0 153 98 0 594 41 13 18 25 1.88 98145--98410 132 2.0 132 99 0 523 36 16 18 28 1.92 98747--98812 21 2.9 24 69 17 68 12 25 7 54 1.63 101137--101179 18 2.4 18 96 0 77 32 9 23 34 1.87 101470--101540 21 3.3 21 94 4 115 42 1 40 15 1.56 102529--102569 21 2.0 21 85 0 55 29 19 39 12 1.88 116847--117119 91 3.0 91 100 0 546 34 25 10 29 1.90 117070--117142 36 2.0 37 91 2 121 47 20 8 23 1.76 118488--118539 22 2.4 22 90 0 77 42 15 7 34 1.75 118570--118903 81 4.0 81 74 16 347 44 11 11 32 1.78 118758--118798 20 2.0 20 100 0 82 41 14 4 39 1.67 119751--119835 18 4.7 18 98 0 152 48 0 47 4 1.23 120320--120613 114 2.6 114 98 0 570 44 11 15 28 1.81 122667--122705 20 2.0 20 85 10 53 56 23 0 20 1.42 123494--123523 15 2.0 15 100 0 60 53 13 0 33 1.40 124234--124337 11 10.2 11 71 22 75 44 0 10 44 1.45 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 124226--124269 19 2.3 19 84 0 52 47 2 6 43 1.42 124236--124343 19 5.6 19 75 18 107 42 0 11 45 1.46 124231--124353 61 2.0 61 100 0 246 44 1 11 42 1.50 124784--124810 12 2.2 12 100 0 54 22 14 7 55 1.64 128512--128536 12 2.1 12 100 0 50 52 8 8 32 1.60 129903--129960 15 4.0 14 80 13 55 67 1 1 29 1.11 135022--135064 21 2.0 21 100 0 86 30 13 0 55 1.39 135639--135698 15 4.0 15 93 0 93 20 21 6 51 1.70 135789--136042 9 28.1 9 70 10 162 8 7 3 79 1.04 135795--135917 1 123.0 1 67 0 57 8 3 4 82 0.91 ----------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- --------- Tables: 1 2