NC_042204.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_042204.1 Lycium chinense chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 155745
Tables: 1
This is table 1 of 1 ( 27 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
5051--5076 13 2.0 13 100 0 52 23 15 0 61 1.33
14737--14769 16 2.1 16 100 0 66 24 24 6 45 1.75
16667--16699 17 2.0 17 94 5 59 18 15 0 66 1.25
32198--32236 19 2.2 17 86 9 51 74 2 5 17 1.12
32938--32963 13 2.0 13 100 0 52 38 15 0 46 1.46
33396--33439 23 2.0 22 90 4 70 36 9 2 52 1.46
33402--33450 13 4.0 13 76 15 59 36 8 2 53 1.43
69211--69260 25 2.0 25 84 7 66 56 8 2 34 1.40
70459--70499 21 2.0 21 90 0 64 29 24 9 36 1.87
70799--70830 16 2.0 16 100 0 64 31 6 25 37 1.81
88810--88847 20 1.9 20 94 0 67 44 5 23 26 1.74
91420--91533 21 5.1 21 87 5 129 13 24 9 52 1.70
93897--93954 18 3.2 18 87 0 89 32 8 24 34 1.86
96543--96600 29 2.0 29 100 0 116 37 6 24 31 1.82
101774--101825 18 2.9 18 100 0 104 26 5 5 61 1.42
101797--101858 22 2.7 24 80 12 76 35 3 9 51 1.51
109436--109501 32 2.1 32 94 0 114 42 22 9 25 1.83
113752--113790 20 2.0 20 85 10 53 56 23 0 20 1.42
126762--126801 21 2.0 20 85 5 53 17 5 20 57 1.58
132843--132908 32 2.1 32 94 0 114 25 9 22 42 1.83
140486--140547 22 2.7 24 80 12 76 51 9 3 35 1.51
140519--140570 18 2.9 18 100 0 104 61 5 5 26 1.42
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
145744--145801 29 2.0 29 100 0 116 31 24 6 37 1.82
148390--148447 18 3.2 18 87 0 89 34 24 8 32 1.86
150811--150924 21 5.1 21 86 7 129 52 9 24 13 1.70
150811--150924 24 5.0 24 87 3 96 52 9 24 13 1.70
153497--153534 20 1.9 20 94 0 67 26 23 5 44 1.74
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Tables: 1
The End!