NC_042232.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_042232.1 Xanthium sibiricum chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 151897
Tables: 1
This is table 1 of 1 ( 43 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
270--298 13 2.2 13 100 0 58 62 0 6 31 1.22
4915--4943 15 1.9 15 100 0 58 41 13 6 37 1.72
5122--5157 18 2.0 18 100 0 72 61 5 27 5 1.41
5174--5199 13 2.0 13 100 0 52 53 0 23 23 1.46
7518--7547 15 2.0 15 93 0 51 46 0 10 43 1.37
8140--8175 19 1.9 18 94 5 63 30 19 11 38 1.86
23427--23477 17 3.0 17 100 0 102 11 17 0 70 1.16
23470--23503 14 2.5 14 95 4 61 32 8 17 41 1.80
25488--25512 12 2.1 12 100 0 50 60 8 8 24 1.52
30324--30365 22 2.0 22 86 13 61 54 2 14 28 1.52
42097--42121 12 2.1 12 100 0 50 76 0 16 8 1.02
42607--42642 18 2.0 18 100 0 72 38 22 5 33 1.77
46877--46904 14 2.0 14 100 0 56 28 21 7 42 1.79
48096--48246 77 2.0 77 100 0 302 28 21 25 25 1.99
58441--58477 19 1.9 19 88 0 56 18 16 5 59 1.55
58897--58934 20 1.9 20 89 10 60 47 5 7 39 1.55
58919--58946 12 2.3 12 100 0 56 57 0 7 35 1.26
58902--58972 32 2.1 35 84 7 94 50 5 5 38 1.49
60430--60465 18 2.0 18 100 0 72 0 27 11 61 1.30
60491--60517 13 2.1 13 100 0 54 44 7 14 33 1.73
63247--63273 13 2.1 13 100 0 54 59 14 25 0 1.36
67746--67786 21 2.0 21 95 0 73 31 24 9 34 1.88
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
74444--74479 18 2.0 18 100 0 72 50 5 16 27 1.68
77444--77468 12 2.1 12 100 0 50 56 0 16 28 1.41
78681--78715 9 4.0 9 85 7 54 0 25 11 62 1.28
78683--78717 17 2.1 17 100 0 70 0 28 11 60 1.32
91122--91166 18 2.5 18 100 0 90 28 11 26 33 1.91
98061--98102 21 2.0 21 100 0 84 38 23 9 28 1.86
98758--98815 23 2.6 23 89 5 84 32 8 6 51 1.59
106814--106875 32 1.9 32 93 0 106 41 22 8 27 1.82
107257--107299 11 4.0 11 93 6 79 55 0 25 18 1.42
107256--107298 21 2.0 21 100 0 86 58 0 23 18 1.40
109099--109133 18 1.9 18 88 0 52 57 2 14 25 1.51
109777--109819 21 2.0 21 95 0 77 51 18 16 13 1.77
118074--118114 20 2.0 21 95 4 75 31 0 14 53 1.41
119911--120016 53 2.0 53 98 0 203 31 16 17 33 1.93
126726--126760 18 1.9 17 100 0 52 28 14 5 51 1.65
128434--128476 11 4.0 11 93 6 79 18 25 0 55 1.42
128435--128477 21 2.0 21 100 0 86 18 23 0 58 1.40
128858--128919 32 1.9 32 93 0 106 27 8 22 41 1.82
136918--136975 23 2.6 23 89 5 84 51 6 8 32 1.59
137631--137672 21 2.0 21 100 0 84 28 9 23 38 1.86
144567--144611 18 2.5 18 100 0 90 33 26 11 28 1.91
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Tables: 1
The End!