NC_042235.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_042235.1 Ampelopsis japonica chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 161430
Tables: 1
This is table 1 of 1 ( 68 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
233--271 17 2.2 18 90 4 62 17 7 7 66 1.40
1939--1968 15 2.0 15 93 0 51 30 20 16 33 1.94
6521--6545 12 2.1 12 100 0 50 24 8 0 68 1.16
6588--6642 23 2.3 24 90 3 85 45 7 7 40 1.60
6702--6738 16 2.3 16 100 0 74 48 5 0 45 1.25
6843--6903 18 3.3 19 86 11 83 60 3 1 34 1.23
6873--6905 10 3.5 10 84 16 52 60 0 0 39 0.97
7663--7697 16 2.2 16 100 0 70 57 5 11 25 1.56
7731--7757 14 1.9 14 100 0 54 44 7 7 40 1.60
10192--10237 22 2.1 22 84 11 60 45 0 2 52 1.13
10191--10237 23 2.0 23 88 8 69 44 0 2 53 1.12
11491--11524 17 2.0 17 100 0 68 35 11 0 52 1.38
14819--14847 14 2.1 14 100 0 58 58 6 13 20 1.58
15125--15158 17 2.0 17 94 0 59 26 38 0 35 1.57
15925--15966 16 2.7 15 89 7 66 40 14 7 38 1.73
28926--28967 20 2.1 20 100 0 84 57 9 14 19 1.64
29108--29147 20 2.0 20 100 0 80 25 15 15 45 1.84
29619--29661 20 2.2 20 100 0 86 20 11 13 53 1.71
30928--30956 14 2.0 15 93 6 51 75 0 0 24 0.80
32907--32951 21 2.1 21 100 0 90 46 0 26 26 1.53
34216--34240 13 1.9 13 100 0 50 48 8 8 36 1.62
34344--34375 16 2.0 16 100 0 64 75 0 0 25 0.81
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
34902--34941 16 2.5 16 95 0 71 50 10 2 37 1.50
39161--39335 86 2.1 84 97 2 332 38 9 20 31 1.84
39813--39965 11 11.9 13 67 23 58 45 1 0 52 1.13
39811--39856 22 2.1 22 100 0 92 45 4 0 50 1.21
39854--39971 2 66.0 2 67 21 75 47 0 0 51 1.06
39819--39981 20 7.8 21 72 19 87 46 1 0 52 1.13
39813--39975 35 4.9 34 78 15 130 46 1 0 52 1.13
39895--39963 15 4.3 15 81 18 86 43 0 0 56 0.99
39895--39981 35 2.5 35 92 0 138 44 0 0 55 0.99
39969--39998 16 1.9 15 93 6 51 36 3 0 60 1.14
39991--40058 23 2.8 25 72 18 72 33 0 2 63 1.10
40014--40046 16 2.1 15 94 5 57 30 0 3 66 1.06
40044--40068 12 2.1 12 100 0 50 32 0 0 68 0.90
40119--40166 19 2.4 20 89 6 71 60 0 0 39 0.97
40119--40156 19 2.0 19 100 0 76 57 0 0 42 0.98
40128--40164 15 2.3 17 90 9 60 59 0 0 40 0.97
46126--46155 15 2.0 15 100 0 60 33 13 13 40 1.83
48072--48106 16 2.2 16 100 0 70 34 25 14 25 1.94
55381--55416 17 2.1 17 100 0 72 16 5 11 66 1.40
55384--55423 17 2.4 17 91 4 64 20 5 10 65 1.42
63593--63645 28 1.9 28 88 11 83 60 3 13 22 1.49
63837--63865 14 2.1 14 100 0 58 72 0 13 13 1.13
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
68190--68225 18 2.0 18 100 0 72 33 5 5 55 1.46
72026--72057 15 2.1 16 94 5 57 43 9 0 46 1.35
72073--72109 18 2.1 18 100 0 74 56 5 5 32 1.45
72677--72721 18 2.5 19 78 10 58 53 0 11 35 1.37
73140--73183 22 1.9 24 90 9 74 59 2 6 31 1.36
73174--73206 15 2.2 15 100 0 66 51 6 0 42 1.26
73201--73231 15 2.1 15 100 0 62 54 0 6 38 1.26
73319--73359 21 2.0 21 95 0 73 29 26 9 34 1.88
76685--76713 13 2.2 13 100 0 58 79 0 0 20 0.74
80370--80415 23 2.0 23 91 0 74 41 10 19 28 1.85
87150--87198 19 2.6 18 81 9 62 30 4 2 63 1.24
94466--94554 21 4.1 21 81 5 90 12 23 10 53 1.68
96916--97003 18 5.1 17 94 4 99 29 9 26 35 1.87
96926--97003 18 4.3 18 98 0 147 29 10 26 33 1.89
96926--97002 9 8.6 9 69 0 55 29 10 27 32 1.90
105221--105258 18 2.1 18 95 0 67 28 5 5 60 1.40
118939--118976 19 2.0 19 89 0 58 47 15 10 26 1.78
124787--125015 114 2.0 114 100 0 458 36 15 16 31 1.90
125602--125807 103 2.0 103 100 0 412 31 9 18 40 1.83
145798--145835 18 2.1 18 95 0 67 60 5 5 28 1.40
154053--154130 18 4.3 18 98 0 147 33 26 10 29 1.89
154066--154129 9 7.1 9 70 0 56 34 28 7 29 1.85
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
154053--154140 18 5.1 17 94 4 99 35 26 9 29 1.87
156502--156590 21 4.1 21 81 5 90 53 10 23 12 1.68
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Tables: 1
The End!