NC_042688.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_042688.1 Sophora tonkinensis chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 155640
Tables: 1
This is table 1 of 1 ( 71 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
3681--3710 15 2.0 15 100 0 60 60 6 6 26 1.47
4622--4708 28 3.2 28 84 12 137 39 2 4 54 1.34
4642--4725 12 6.7 12 75 10 69 39 1 3 55 1.25
4622--4725 52 2.0 52 100 0 208 38 1 3 55 1.29
5211--5237 14 1.9 14 100 0 54 66 0 0 33 0.92
5227--5266 18 2.3 18 95 4 73 65 0 10 25 1.24
10638--10680 21 2.0 21 100 0 86 53 4 4 37 1.43
10643--10689 21 2.2 21 88 0 67 51 4 2 42 1.33
10817--10870 21 2.4 22 81 15 65 59 1 3 35 1.26
10831--10872 21 2.0 21 100 0 84 61 0 0 38 0.96
12839--12896 28 2.1 28 100 0 116 56 6 13 22 1.61
12839--12904 28 2.4 28 92 5 98 57 9 13 19 1.63
25959--25985 13 2.1 13 100 0 54 70 0 7 22 1.12
27097--27139 20 2.2 20 100 0 86 48 9 4 37 1.56
27670--27708 15 2.6 15 87 0 51 46 7 5 41 1.55
29118--29147 15 2.0 15 100 0 60 26 6 13 53 1.64
34801--34831 15 2.1 15 100 0 62 54 6 0 38 1.26
35173--35255 42 2.1 39 84 11 105 36 2 1 60 1.18
35222--35260 19 2.0 20 95 5 71 43 0 0 56 0.99
35342--35496 2 83.0 2 69 17 66 40 3 2 54 1.30
35342--35573 15 15.5 15 67 16 52 40 3 2 53 1.32
35403--35453 22 2.3 22 96 3 93 31 7 0 60 1.25
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
35396--35519 40 3.3 39 84 9 143 38 3 4 54 1.36
35482--35525 23 1.9 23 90 0 70 45 0 6 47 1.29
40901--40947 19 2.5 19 96 0 85 48 0 0 51 1.00
40908--40947 11 3.9 11 81 18 59 52 0 0 47 1.00
45636--45675 15 2.6 16 84 4 55 42 7 0 50 1.30
45805--45868 19 3.1 21 86 8 71 32 4 3 59 1.34
45827--45871 19 2.4 19 96 0 81 28 4 4 62 1.34
51791--51840 25 2.0 25 100 0 100 24 16 16 44 1.86
54510--54549 16 2.5 17 84 8 57 7 5 7 80 1.03
55592--55636 22 2.0 22 100 0 90 46 0 4 48 1.22
55596--55643 22 2.1 22 88 3 69 50 0 6 43 1.27
60785--60830 23 2.0 23 100 0 92 17 17 17 47 1.83
67821--67883 28 2.2 28 97 0 117 50 0 14 34 1.43
68372--68412 6 7.2 6 83 10 50 31 9 0 58 1.31
68370--68404 17 2.1 17 100 0 70 28 11 0 60 1.32
68578--68616 21 1.9 21 89 5 62 30 23 10 35 1.88
71321--71356 18 2.0 18 100 0 72 38 11 0 50 1.38
71914--71965 26 2.0 26 100 0 104 30 7 0 61 1.24
81725--81751 13 2.1 13 100 0 54 22 7 7 62 1.46
84993--85017 12 2.1 12 100 0 50 48 8 16 28 1.74
89447--89511 21 3.1 21 90 0 103 53 12 23 10 1.69
90758--90825 21 3.2 21 78 0 73 11 20 7 60 1.55
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
93179--93218 9 4.4 9 90 0 62 35 7 30 27 1.84
95852--95887 2 18.5 2 91 5 56 50 0 2 47 1.15
101086--101111 13 2.0 13 100 0 52 23 7 7 61 1.49
113194--113237 12 3.5 13 78 9 56 77 4 15 2 1.04
119886--119924 19 2.1 19 100 0 78 30 15 0 53 1.42
121198--121223 13 2.0 13 100 0 52 53 7 0 38 1.30
121230--121281 24 2.3 22 83 12 61 59 0 3 36 1.16
121233--121270 16 2.3 17 83 16 53 63 0 2 34 1.09
124955--124999 22 2.0 22 100 0 90 35 13 0 51 1.41
125021--125061 2 20.5 2 94 0 73 46 0 2 51 1.14
126395--126423 14 2.0 15 93 6 51 34 3 0 62 1.12
126426--126485 31 2.0 31 84 15 83 58 0 1 40 1.08
126434--126492 28 2.0 31 83 9 79 62 0 0 37 0.95
126942--126986 21 2.1 21 91 0 72 48 8 8 33 1.65
129366--129398 15 2.3 15 89 5 50 54 9 9 27 1.62
129612--129666 9 5.4 9 80 18 56 10 1 5 81 0.92
129610--129672 22 2.8 24 75 18 71 12 1 4 80 0.93
129612--129671 32 1.9 30 87 12 86 11 1 5 81 0.91
129666--129711 23 2.0 23 100 0 92 34 8 4 52 1.52
140115--140140 13 2.0 13 100 0 52 61 7 7 23 1.49
140630--140662 15 2.1 17 88 11 52 81 0 6 12 0.85
145339--145374 2 18.5 2 91 5 56 47 2 0 50 1.15
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
148008--148047 9 4.4 9 90 0 62 27 30 7 35 1.84
148007--148054 9 5.3 9 87 0 51 33 27 6 33 1.82
150419--150470 21 2.5 21 87 0 77 61 9 19 9 1.54
150434--150490 24 2.5 22 83 8 62 56 12 17 14 1.68
151715--151779 21 3.1 21 90 0 112 10 23 12 53 1.69
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Tables: 1
The End!