NC_042715.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_042715.1 Rubus coreanus chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 155405
Tables: 1
This is table 1 of 1 ( 68 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4002--4064 13 4.8 13 79 12 67 46 3 0 50 1.17
3995--4064 26 2.7 26 82 6 81 48 2 0 48 1.16
8097--8158 17 3.6 18 85 12 78 35 1 12 50 1.51
8129--8159 16 1.9 16 93 0 53 38 3 12 45 1.59
14099--14131 16 2.1 16 100 0 66 24 12 12 51 1.73
18383--18428 11 4.0 11 83 10 65 41 8 0 50 1.33
18379--18426 24 2.0 24 100 0 96 37 8 0 54 1.31
18379--18415 13 3.0 13 80 11 51 35 8 0 56 1.29
18559--18600 14 3.2 13 83 16 52 42 4 14 38 1.66
18574--18600 14 1.9 14 100 0 54 37 7 14 40 1.74
18610--18648 18 2.2 18 85 0 51 38 7 7 46 1.61
18705--18755 10 4.6 10 80 20 57 52 0 1 45 1.12
18720--18760 12 3.2 14 74 25 54 58 0 0 41 0.98
18711--18760 24 2.1 24 100 0 100 56 0 0 44 0.99
20543--20573 14 2.1 15 94 5 55 29 0 12 58 1.35
23026--23068 6 7.5 6 82 17 56 16 18 0 65 1.28
23034--23070 18 2.1 18 100 0 74 16 21 0 62 1.33
23026--23068 11 3.8 11 85 11 52 16 18 0 65 1.28
23234--23261 14 2.0 14 100 0 56 35 14 7 42 1.73
23306--23337 12 2.6 13 85 14 50 40 6 0 53 1.26
23360--23426 27 2.7 24 82 13 89 38 10 2 47 1.53
23363--23416 27 2.0 27 100 0 108 37 11 3 48 1.57
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
26919--26962 13 3.5 13 75 12 56 34 11 9 45 1.72
26920--26967 24 2.0 24 100 0 96 37 12 8 41 1.73
27141--27166 13 2.0 13 100 0 52 38 0 15 46 1.46
28154--28331 89 2.0 89 97 0 338 29 14 24 31 1.95
28914--28964 25 2.0 25 100 0 102 39 7 11 41 1.71
29097--29122 13 2.0 13 100 0 52 46 0 7 46 1.31
29365--29429 31 2.1 31 100 0 130 30 12 9 47 1.72
30976--31001 13 2.0 13 100 0 52 46 7 7 38 1.61
31009--31042 17 2.0 17 94 0 59 55 0 0 44 0.99
30982--31051 28 2.5 27 84 11 79 51 1 4 42 1.30
33392--33427 18 2.0 18 100 0 72 33 5 16 44 1.71
37217--37251 17 2.1 17 89 10 54 40 5 5 48 1.51
38482--38515 12 2.9 12 95 4 61 58 0 14 26 1.36
39178--39210 17 1.9 17 93 0 57 33 3 3 60 1.27
39739--39777 21 1.9 21 94 5 71 33 23 10 33 1.88
42043--42075 15 2.1 16 88 5 50 72 0 9 18 1.10
43905--43936 13 2.5 13 95 5 57 25 12 0 62 1.30
46310--46345 18 2.0 18 100 0 72 38 5 11 44 1.63
48204--48241 20 1.9 20 100 0 76 36 13 15 34 1.87
48416--48540 49 2.6 49 100 0 250 26 11 31 31 1.91
54641--54668 14 2.0 14 100 0 56 28 14 0 57 1.38
61061--61128 21 3.2 21 82 0 82 11 22 7 58 1.57
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
63495--63531 18 2.1 18 100 0 74 32 5 27 35 1.79
71564--71611 24 2.0 24 100 0 96 37 16 29 16 1.91
79673--79734 32 1.9 32 93 0 106 38 22 11 27 1.88
96138--96168 15 2.1 15 100 0 62 35 19 6 38 1.77
99055--99099 18 2.5 19 82 7 58 4 26 0 68 1.08
102956--103017 32 1.9 32 93 0 106 27 11 22 38 1.88
111079--111126 24 2.0 24 100 0 96 16 29 16 37 1.91
119159--119195 18 2.1 18 100 0 74 35 27 5 32 1.79
121563--121651 21 4.1 21 81 5 81 56 7 23 12 1.62
126360--126412 26 2.0 26 100 0 106 22 15 24 37 1.92
126637--126670 17 2.0 17 94 0 59 44 11 0 44 1.40
126649--126702 26 2.1 26 100 0 108 42 7 3 46 1.49
126795--126842 23 2.1 23 96 0 87 33 14 20 31 1.93
128387--128419 16 2.1 16 100 0 66 12 18 6 63 1.48
132270--132343 23 3.2 23 100 0 148 18 17 8 55 1.66
133642--133698 17 3.4 17 81 18 75 35 0 5 59 1.20
133639--133705 26 2.6 27 83 4 75 34 0 4 61 1.16
133935--133960 13 2.0 13 100 0 52 38 15 15 30 1.88
135281--135311 15 2.1 15 93 0 53 51 9 12 25 1.70
136930--136959 9 3.4 9 90 9 53 53 0 10 36 1.35
139395--139472 17 5.0 17 79 20 107 23 11 11 53 1.69
139406--139468 27 2.3 27 97 2 117 22 11 11 55 1.66
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
139419--139476 27 2.1 27 87 6 82 27 8 13 50 1.71
155161--155195 16 2.2 17 90 10 56 71 5 11 11 1.30
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Tables: 1
The End!