NC_042796.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_042796.1 Pogostemon cablin isolate Shipai chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 152461
Tables: 1
This is table 1 of 1 ( 38 repeats found )
Click on indices to view alignment
Table Explanation
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
6303--6329 14 1.9 14 100 0 54 29 18 7 44 1.77
10366--10391 13 2.0 13 100 0 52 7 15 15 61 1.55
12726--12784 9 6.2 10 78 11 54 55 11 3 28 1.52
12757--12784 9 3.1 9 100 0 56 57 10 0 32 1.33
13421--13455 16 2.2 16 100 0 70 48 5 5 40 1.51
15784--15820 19 1.9 19 94 0 65 37 16 5 40 1.71
27932--27960 14 2.1 14 100 0 58 58 13 0 27 1.36
28743--28768 11 2.4 11 100 0 52 15 0 19 65 1.27
29324--29349 13 2.0 13 100 0 52 38 7 15 38 1.76
44570--44595 13 2.0 13 100 0 52 15 0 15 69 1.20
56391--56421 12 2.6 12 100 0 62 45 0 45 9 1.36
60541--60570 15 2.0 15 100 0 60 26 13 6 53 1.64
63512--63538 13 2.1 13 100 0 54 62 0 7 29 1.22
67645--67684 21 1.9 21 100 0 80 30 25 12 32 1.92
69494--69533 21 1.9 21 85 10 55 45 12 17 25 1.83
74533--74575 21 2.0 22 86 4 61 41 11 13 32 1.81
81576--81612 18 2.1 18 100 0 74 21 16 0 62 1.33
88346--88400 24 2.5 22 85 8 67 14 23 12 49 1.78
88368--88435 21 3.2 21 77 8 75 11 22 10 55 1.65
90770--90815 18 2.6 18 100 0 92 28 10 26 34 1.90
98540--98574 17 2.0 18 94 5 63 28 0 22 48 1.51
106519--106579 31 2.0 31 96 0 113 39 22 9 27 1.86
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
110821--110859 20 2.0 20 85 10 53 56 23 0 20 1.42
111654--111682 14 2.1 14 100 0 58 20 0 13 65 1.26
112056--112089 17 2.0 17 100 0 68 70 17 0 11 1.16
112428--112458 15 2.1 15 93 0 53 25 35 6 32 1.82
118197--118223 14 1.9 14 100 0 54 22 22 0 55 1.44
118209--118249 20 2.0 20 100 0 82 31 14 9 43 1.78
122099--122132 17 2.0 17 100 0 68 41 0 17 41 1.50
125498--125549 14 3.9 14 82 5 63 0 15 5 78 0.92
125496--125531 18 2.1 17 89 5 54 0 16 2 80 0.83
125495--125549 27 2.0 27 86 6 76 0 14 5 80 0.89
129436--129496 31 2.0 31 96 0 113 27 9 22 39 1.86
137441--137475 17 2.0 18 94 5 63 48 22 0 28 1.51
137468--137513 23 2.0 23 86 0 65 60 6 6 26 1.46
145200--145245 18 2.6 18 100 0 92 34 26 10 28 1.90
147598--147651 21 2.6 21 82 11 74 59 11 20 9 1.59
147580--147669 21 4.1 22 75 8 67 53 11 23 12 1.70
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!