NC_042857.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_042857.1 Trigonella foenum-graecum voucher I.S. Choi MD025 plastid, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 125645
Tables: 1
This is table 1 of 1 ( 72 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
158--183 13 2.0 13 100 0 52 46 15 0 38 1.46
4669--4718 25 2.0 25 100 0 100 28 16 20 36 1.93
6644--6906 3 84.3 3 77 7 247 63 3 4 28 1.30
6644--6898 22 11.6 22 81 10 267 63 3 3 28 1.29
6646--6875 19 11.9 19 83 8 243 64 3 3 27 1.29
6671--6875 19 10.9 19 85 5 247 64 3 3 27 1.29
6644--6825 25 7.8 25 78 16 167 64 3 3 28 1.29
10264--10288 12 2.1 12 100 0 50 24 0 16 60 1.36
12322--12351 16 1.9 15 93 6 51 66 3 13 16 1.37
13970--14023 14 3.9 14 81 11 67 40 5 12 40 1.67
14290--14356 19 3.4 19 75 15 64 64 4 2 28 1.28
14314--14372 26 2.2 26 85 8 75 64 1 8 25 1.31
14842--14869 14 2.0 14 100 0 56 35 7 14 42 1.73
17285--17320 14 2.6 14 95 0 63 58 8 5 27 1.50
17680--17712 17 1.9 17 93 0 57 48 3 12 36 1.56
23461--23502 21 2.0 21 100 0 84 47 4 0 47 1.23
31726--31753 10 2.8 10 100 0 56 39 10 7 42 1.67
34166--34192 12 2.2 12 100 0 54 40 7 14 37 1.74
50070--50118 16 3.1 16 96 0 89 46 6 28 18 1.72
54255--54300 23 2.0 23 100 0 92 39 13 8 39 1.75
54637--54706 21 3.3 21 93 0 113 37 0 5 57 1.23
54623--54689 21 3.6 18 77 18 66 35 0 7 56 1.27
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
56895--56977 21 4.0 21 96 0 148 28 20 21 28 1.98
56895--57104 42 5.1 42 78 13 233 27 20 23 28 1.99
56982--57104 21 5.7 21 85 9 158 26 19 24 29 1.98
56926--57031 54 2.0 54 96 0 194 28 21 21 28 1.99
56905--57064 75 2.1 75 95 0 284 28 20 23 28 1.99
57043--57080 12 3.2 12 100 0 76 26 15 34 23 1.95
57857--57944 45 2.0 45 100 0 176 22 14 20 42 1.89
58329--58358 14 2.1 14 93 0 51 30 16 0 53 1.44
59430--59491 32 1.9 32 100 0 124 29 19 20 30 1.97
63066--63293 120 2.0 110 89 10 343 44 6 10 38 1.65
63302--63605 20 14.4 20 87 10 446 45 9 10 35 1.71
63315--63613 45 7.0 45 93 5 466 44 9 10 35 1.72
63302--63613 85 3.7 85 94 4 526 44 9 10 35 1.71
64766--64836 22 3.2 22 66 18 65 36 16 12 33 1.87
64940--65097 72 2.2 72 98 0 307 33 18 24 23 1.97
65354--65567 63 3.3 63 88 11 338 33 17 25 24 1.96
65360--65462 34 3.2 34 64 23 94 35 17 24 22 1.95
65383--65480 30 3.2 30 63 23 76 28 18 25 27 1.98
65432--65606 72 2.4 72 97 1 325 33 17 25 23 1.96
65594--65758 21 6.8 27 84 16 204 40 22 23 14 1.90
65615--65775 21 7.1 21 91 8 214 40 21 23 14 1.89
65594--65758 48 3.4 48 81 18 234 40 22 23 14 1.90
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
67132--67161 12 2.5 12 100 0 60 73 0 16 10 1.09
71231--71293 13 4.8 13 73 21 51 33 4 7 53 1.51
71231--71293 26 2.4 27 89 7 94 33 4 7 53 1.51
71242--71322 13 6.0 13 76 18 60 34 3 8 53 1.50
71247--71302 26 2.2 26 86 0 76 33 3 8 53 1.49
71230--71327 21 4.4 22 67 25 71 35 4 10 50 1.55
72670--72786 58 2.0 58 100 0 234 32 13 28 25 1.94
80263--80288 13 2.0 13 100 0 52 46 7 7 38 1.61
80568--80595 10 2.8 10 100 0 56 28 0 17 53 1.44
85088--85143 25 2.2 25 96 0 103 28 1 3 66 1.19
86822--86856 16 2.2 16 95 5 63 31 11 5 51 1.61
86767--86894 65 2.0 60 91 7 202 32 10 3 54 1.49
88370--88573 68 3.1 68 95 3 364 37 11 12 37 1.80
91833--91857 11 2.3 11 100 0 50 36 0 0 64 0.94
105240--105355 54 2.2 53 96 1 214 20 12 12 54 1.70
105570--105609 21 2.0 21 90 5 64 42 7 17 32 1.77
107372--107413 21 2.0 21 100 0 84 52 23 14 9 1.71
109167--109216 22 2.3 22 100 0 100 68 12 8 12 1.40
110689--110756 33 2.1 33 100 0 136 50 5 14 29 1.67
111820--111881 20 3.1 20 100 0 124 33 9 0 56 1.32
111898--111950 2 26.5 2 77 7 54 50 1 0 47 1.12
116841--116870 13 2.2 14 94 5 53 60 0 6 33 1.23
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
116848--116907 22 2.9 21 80 11 70 60 0 10 30 1.30
116848--116906 23 2.7 22 82 7 68 61 0 10 28 1.29
117053--117086 17 2.0 17 100 0 68 64 5 0 29 1.17
121778--121816 19 2.1 19 95 0 69 61 2 5 30 1.31
122137--122175 16 2.4 16 91 0 60 46 5 0 48 1.24
122859--122937 19 4.3 19 88 6 119 50 5 1 43 1.32
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Tables: 1
The End!