NC_042921.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_042921.1 Mimosa pudica chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 163237
Tables: 1
This is table 1 of 1 ( 104 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
3979--4014 18 2.0 18 88 0 54 55 0 0 44 0.99
4511--4535 13 1.9 13 100 0 50 72 12 0 16 1.13
5347--5385 19 2.1 19 100 0 78 10 15 0 74 1.07
6486--6513 12 2.3 12 100 0 56 42 7 14 35 1.73
6546--6609 16 3.8 16 74 23 60 70 1 4 23 1.15
7383--7420 15 2.5 15 86 0 58 47 2 0 50 1.15
7408--7442 16 2.2 16 94 0 61 62 0 8 28 1.24
7489--7521 13 2.4 14 85 10 50 84 0 6 9 0.76
8394--8426 15 2.2 15 89 10 50 60 0 0 39 0.97
8393--8456 24 2.9 22 73 13 60 54 0 1 43 1.09
8702--8737 18 2.0 18 100 0 72 27 16 0 55 1.42
8752--8788 18 2.1 18 94 0 65 27 5 8 59 1.48
8759--8796 18 2.2 17 86 9 51 34 2 10 52 1.50
9059--9097 9 4.3 9 90 0 60 48 20 0 30 1.50
9304--9329 12 2.2 12 100 0 52 69 7 0 23 1.14
9421--9463 19 2.2 20 91 4 70 41 11 0 46 1.40
11599--11637 12 3.1 12 88 7 51 43 2 0 53 1.14
11657--11686 15 2.0 15 100 0 60 40 0 6 53 1.27
15020--15091 14 5.2 13 80 8 72 43 1 0 55 1.08
15076--15113 18 2.1 18 100 0 76 50 0 5 44 1.24
15021--15082 3 20.3 3 78 15 65 40 1 0 58 1.08
16940--16967 13 2.2 13 100 0 56 57 14 7 21 1.61
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
23575--23611 19 1.9 19 88 0 56 45 5 13 35 1.66
31742--31852 27 3.8 29 74 18 97 49 0 0 49 1.07
31743--31797 17 3.0 18 79 15 51 49 0 1 49 1.11
31802--31852 9 5.8 9 75 11 52 52 0 0 47 1.00
31858--31884 13 2.1 13 100 0 54 48 7 7 37 1.59
31867--31955 41 2.1 41 82 13 103 49 4 4 41 1.43
31925--31981 26 2.2 26 87 0 78 56 3 3 36 1.34
33177--33209 16 2.0 17 88 5 50 12 0 12 75 1.04
35836--35900 21 3.0 22 90 4 105 43 0 10 46 1.38
35842--35917 21 3.5 20 87 8 64 47 1 10 40 1.46
37097--37135 20 2.0 20 94 0 69 33 12 15 38 1.85
40419--40464 23 2.0 23 100 0 92 21 13 8 56 1.63
41235--41267 16 2.1 16 100 0 66 45 6 6 42 1.53
41378--41403 12 2.2 12 100 0 52 57 15 0 26 1.38
41662--41725 12 5.3 12 85 10 78 26 0 6 67 1.14
41653--41725 4 18.8 4 75 13 64 24 0 5 69 1.09
51721--51751 14 2.2 14 100 0 62 32 12 0 54 1.38
52085--52185 14 8.3 12 68 23 52 64 0 1 32 1.11
52085--52172 8 10.8 8 73 18 65 63 1 1 34 1.09
52339--52374 16 2.3 15 95 4 63 19 2 13 63 1.41
53019--53059 20 2.0 20 90 0 64 26 7 19 46 1.76
55138--55168 15 2.1 15 93 0 53 22 0 16 61 1.34
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
56607--56670 23 2.8 23 83 9 69 21 1 3 73 1.06
56855--56898 22 2.0 22 91 8 72 47 9 0 43 1.35
56852--56900 12 4.2 12 82 17 68 48 8 0 42 1.32
57143--57174 16 2.0 16 93 0 55 34 3 12 50 1.56
61147--61186 20 2.0 20 100 0 80 45 0 15 40 1.46
62810--62839 13 2.3 13 100 0 60 60 16 6 16 1.56
62852--62893 10 4.2 10 84 0 57 28 2 11 57 1.47
62850--62890 20 2.0 20 90 0 64 34 2 12 51 1.52
62918--62955 17 2.2 18 90 4 60 39 0 2 57 1.12
62943--62976 15 2.3 15 90 10 52 32 5 0 61 1.20
63057--63102 18 2.5 18 83 13 58 34 0 0 65 0.93
63057--63103 12 3.5 13 78 21 53 34 0 0 65 0.93
63683--63710 13 2.2 13 100 0 56 25 0 28 46 1.53
65253--65295 12 3.4 13 81 12 54 37 0 2 60 1.10
65288--65372 16 5.8 16 72 20 69 52 0 5 41 1.25
69599--69629 15 2.1 15 93 0 53 48 16 9 25 1.76
73364--73469 39 2.7 39 83 12 128 50 2 0 47 1.16
73379--73489 8 12.9 8 70 13 51 54 1 0 44 1.10
73368--73483 40 3.0 39 72 17 105 51 2 0 45 1.14
73409--73477 26 2.7 26 78 10 88 52 1 0 46 1.09
73629--73661 15 2.1 16 88 5 50 39 12 9 39 1.74
73766--73794 14 2.1 14 93 6 51 65 0 13 20 1.26
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
74917--74993 12 6.7 12 73 7 61 41 1 0 57 1.07
74943--75032 18 4.9 19 75 15 75 48 0 2 48 1.13
75107--75145 21 1.9 21 89 5 62 30 23 10 35 1.88
75373--75429 15 3.8 15 97 0 105 35 24 19 21 1.96
78590--78713 19 6.0 22 76 18 83 42 1 0 55 1.09
78617--78723 6 17.2 6 77 14 101 46 0 0 53 1.00
78616--78709 25 3.7 25 83 9 120 43 0 0 56 0.99
88093--88134 9 4.6 9 83 16 59 45 0 0 54 0.99
88097--88217 12 10.0 12 68 25 60 48 2 0 48 1.14
88132--88170 9 4.0 9 81 18 51 61 0 0 38 0.96
88096--88177 21 4.3 19 85 14 91 52 0 0 47 1.00
88189--88224 15 2.3 15 95 4 63 38 5 0 55 1.23
88252--88311 15 3.8 16 77 16 54 33 0 3 63 1.11
91766--91794 15 1.9 15 100 0 58 48 0 13 37 1.43
94050--94144 35 2.7 35 91 0 154 22 9 21 47 1.79
94139--94189 23 2.3 23 93 3 86 45 7 11 35 1.70
97018--97086 21 3.3 21 87 2 95 11 24 7 56 1.60
99419--99481 9 7.3 9 80 10 69 33 4 23 38 1.76
107118--107151 11 3.0 11 87 8 50 5 8 2 82 0.93
107661--107693 11 3.1 11 91 4 50 33 0 15 51 1.43
117439--117516 26 3.0 26 98 0 147 62 11 3 21 1.44
117422--117516 47 1.9 50 87 10 142 61 12 4 22 1.49
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
117422--117516 26 4.0 23 89 9 113 61 12 4 22 1.49
120789--120819 16 1.9 16 100 0 62 54 6 0 38 1.26
121783--121829 19 2.7 18 83 12 62 34 8 0 57 1.29
123505--123529 11 2.3 11 100 0 50 56 0 16 28 1.41
129397--129426 4 7.8 4 92 7 53 26 20 0 53 1.46
134173--134220 21 2.3 21 96 3 89 33 4 12 50 1.59
135787--135829 18 2.4 18 84 0 59 34 18 18 27 1.95
137767--137861 26 4.0 23 89 9 113 22 4 12 61 1.49
137767--137844 26 3.0 26 98 0 147 21 3 11 62 1.44
137767--137861 47 1.9 51 87 10 144 22 4 12 61 1.49
147590--147622 11 3.1 11 91 4 50 51 15 0 33 1.43
148132--148164 12 3.0 11 87 12 50 81 3 9 6 0.95
155802--155864 9 7.3 9 80 10 69 38 23 4 33 1.76
158197--158265 21 3.3 21 87 2 95 56 7 24 11 1.60
161094--161144 23 2.3 22 93 3 84 35 11 7 45 1.70
161139--161233 35 2.7 35 91 0 154 47 21 9 22 1.79
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Tables: 1
The End!