NC_043829.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_043829.1 Berberis aristata plastid, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 166126
Tables: 1
This is table 1 of 1 ( 43 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
5657--5703 24 2.0 24 100 0 94 8 12 0 78 0.95
8022--8054 17 1.9 17 100 0 66 36 15 6 42 1.71
29582--29609 14 2.0 14 100 0 56 42 14 14 28 1.84
47895--47932 19 2.0 19 100 0 76 52 0 26 21 1.47
59600--59804 15 13.7 15 88 0 239 34 10 30 24 1.89
59589--59804 45 4.8 45 86 1 281 33 11 30 24 1.90
59589--59804 60 3.6 60 89 1 308 33 11 30 24 1.90
60628--60692 27 2.4 26 84 5 76 27 26 4 41 1.75
60640--60695 27 2.1 27 96 0 103 25 23 3 48 1.67
80442--80509 24 2.8 24 84 4 93 30 19 25 25 1.98
82275--82309 18 2.0 18 94 5 63 22 17 11 48 1.79
87346--87572 117 1.9 117 100 0 454 44 14 5 35 1.68
89264--89309 11 4.2 12 78 15 55 50 2 0 47 1.13
89260--89325 27 2.4 26 85 14 73 50 3 0 46 1.16
89260--89313 21 2.5 22 91 5 85 50 1 0 48 1.11
89403--89454 21 2.5 21 100 0 104 7 30 9 51 1.62
90481--90528 24 2.0 24 91 0 78 35 20 16 27 1.94
108897--109043 21 7.0 21 97 0 267 42 9 6 40 1.64
109147--109205 29 2.0 29 100 0 118 47 6 16 28 1.72
110066--110102 15 2.5 15 100 0 74 48 5 29 16 1.68
110496--110522 12 2.2 12 100 0 54 51 14 18 14 1.76
110808--110868 18 3.2 18 73 13 68 54 3 29 13 1.55
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
110823--110849 12 2.2 12 100 0 54 51 0 33 14 1.43
110966--111089 9 13.7 9 73 16 96 75 0 24 0 0.86
110979--111121 15 9.5 15 92 2 153 74 0 25 0 0.87
110977--111121 45 3.4 45 85 7 196 73 0 25 0 0.88
112948--112990 21 2.0 21 100 0 86 53 13 9 23 1.69
123301--123328 14 2.0 14 100 0 56 57 14 7 21 1.61
128697--128741 21 2.1 21 92 8 74 20 20 6 53 1.67
128978--129056 27 2.9 27 98 0 149 11 21 2 64 1.38
129355--129391 15 2.5 15 100 0 74 16 29 5 48 1.68
130252--130310 29 2.0 29 100 0 118 28 16 6 47 1.72
130389--130434 23 2.0 23 95 0 83 34 10 8 45 1.70
130198--130488 141 2.0 143 89 5 444 32 12 10 44 1.76
130555--130701 21 7.0 21 97 0 267 40 6 9 42 1.64
149070--149117 24 2.0 24 91 0 78 27 16 20 35 1.94
150144--150195 21 2.5 21 100 0 104 51 9 30 7 1.62
150272--150335 27 2.2 31 86 13 100 46 0 3 50 1.17
150289--150334 11 4.2 12 81 15 55 47 0 2 50 1.13
150287--150338 21 2.5 22 90 6 81 48 0 1 50 1.12
152026--152252 117 1.9 117 100 0 454 35 5 14 44 1.68
157289--157323 17 2.0 18 94 5 63 48 11 17 22 1.79
159089--159156 24 2.8 24 84 4 93 25 25 19 30 1.98
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Tables: 1
The End!