NC_043901.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_043901.1 Prunus armeniaca cultivar Zhenzhuyou chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 158071
Tables: 1
This is table 1 of 1 ( 52 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4846--4871 13 2.0 13 100 0 52 46 7 0 46 1.31
6966--7036 30 2.5 27 82 13 81 40 0 4 54 1.20
6963--7032 17 4.2 17 72 15 58 41 0 2 55 1.14
8508--8537 15 1.9 16 93 6 53 43 13 13 30 1.82
8553--8587 17 2.0 17 88 5 52 22 5 0 71 1.07
9764--9794 11 2.7 11 95 5 53 38 3 0 58 1.15
10012--10044 16 2.1 16 94 0 57 48 6 0 45 1.27
10033--10074 20 2.1 20 100 0 84 59 0 0 40 0.97
10244--10282 11 3.8 11 80 19 57 61 0 10 28 1.28
10242--10297 19 2.9 19 94 2 94 60 0 8 30 1.27
10233--10302 27 2.5 29 76 17 76 58 0 7 34 1.25
13405--13438 17 2.0 17 100 0 68 41 11 17 29 1.85
21356--21385 15 2.0 15 93 0 51 36 13 16 33 1.88
21361--21390 15 2.0 15 93 0 51 33 13 23 30 1.93
27925--27952 13 2.2 13 100 0 56 39 0 21 39 1.54
29066--29120 17 3.1 17 87 10 83 32 5 1 60 1.30
29073--29112 19 2.1 19 100 0 80 37 5 0 57 1.21
30120--30146 8 3.4 8 100 0 54 14 11 11 62 1.53
34153--34187 13 2.7 13 95 0 61 60 5 0 34 1.21
34201--34237 15 2.6 15 87 8 51 67 0 8 24 1.17
48445--48494 13 4.1 12 77 12 57 68 0 2 30 1.01
50475--50527 13 4.2 13 83 11 65 45 1 3 49 1.31
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
51635--51666 16 2.0 16 100 0 64 18 12 12 56 1.67
53146--53194 3 17.0 3 76 16 50 59 4 0 36 1.17
53137--53201 19 3.5 19 88 12 100 55 6 0 38 1.25
53143--53196 16 3.4 16 82 14 67 57 3 0 38 1.17
53244--53311 30 2.2 32 89 5 104 44 4 0 51 1.21
53331--53392 8 7.5 8 79 13 72 33 0 0 66 0.92
53327--53372 23 2.0 23 100 0 92 26 0 0 73 0.83
53355--53412 24 2.4 25 88 8 84 37 1 0 60 1.07
67727--67761 17 2.1 17 88 0 52 34 5 11 48 1.63
71966--72002 15 2.5 15 95 0 65 56 0 5 37 1.22
76575--76610 18 2.0 18 100 0 72 38 5 11 44 1.63
91273--91340 21 3.2 21 82 0 82 11 22 7 58 1.57
93692--93743 18 2.9 18 94 0 95 32 7 28 30 1.85
96718--96768 17 3.1 16 78 16 59 52 7 0 39 1.30
96723--96760 16 2.5 16 87 8 53 50 5 0 44 1.24
101261--101286 12 2.2 12 100 0 52 7 7 0 84 0.77
109983--110046 31 2.1 31 93 0 110 40 25 7 26 1.82
116354--116391 18 2.1 19 95 5 69 47 0 0 52 1.00
116600--116636 18 2.1 17 95 5 65 56 5 2 35 1.36
117102--117138 11 3.5 11 78 14 51 75 0 5 18 0.99
117101--117140 20 2.0 20 100 0 80 75 0 5 20 0.99
130318--130351 15 2.3 15 94 0 59 0 20 5 73 1.04
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
130323--130373 18 2.7 19 85 8 61 0 21 5 72 1.05
134311--134374 31 2.1 31 93 0 110 26 7 25 40 1.82
143071--143096 12 2.2 12 100 0 52 84 0 7 7 0.77
147591--147641 17 3.1 18 75 16 56 41 0 7 50 1.31
147597--147641 16 2.8 16 83 6 56 44 0 6 48 1.29
147597--147651 15 3.6 16 78 9 62 47 0 5 47 1.25
150614--150665 18 2.9 18 94 0 95 30 28 7 32 1.85
153018--153106 21 4.1 21 81 5 81 56 7 23 12 1.62
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Tables: 1
The End!