NC_043922.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_043922.1 Allium chinense chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 152525
Tables: 1
This is table 1 of 1 ( 54 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
3062--3103 21 2.0 21 100 0 84 42 14 4 38 1.66
4882--4916 17 2.1 17 100 0 70 28 11 5 54 1.59
4883--4921 17 2.4 16 91 8 62 33 10 5 51 1.58
4963--4998 18 2.0 18 100 0 72 11 16 5 66 1.40
6845--6872 14 2.0 14 100 0 56 35 21 7 35 1.81
7005--7048 24 2.0 21 83 16 54 59 6 2 31 1.36
7005--7042 12 3.2 12 92 7 60 57 7 2 31 1.41
7036--7079 15 2.9 15 86 3 61 63 2 9 25 1.35
11919--11944 13 2.0 13 100 0 52 53 15 0 30 1.42
18965--18993 13 2.2 13 100 0 58 31 6 20 41 1.79
18981--19016 18 2.0 18 100 0 72 44 5 16 33 1.71
25601--25631 15 2.1 15 100 0 62 38 6 6 48 1.55
26720--26751 15 2.1 15 100 0 64 34 12 6 46 1.67
26941--26981 20 2.0 20 100 0 82 26 14 24 34 1.94
28251--28283 16 2.1 16 100 0 66 42 15 12 30 1.83
28721--28801 29 3.1 29 73 26 106 39 7 13 39 1.73
28751--28792 21 2.0 21 100 0 84 33 9 14 42 1.78
29726--29760 17 2.1 17 100 0 70 48 17 0 34 1.47
29931--29961 15 2.1 15 100 0 62 35 19 0 45 1.51
31200--31231 2 17.0 2 87 12 50 53 0 0 46 1.00
40535--40580 11 4.2 11 100 0 92 54 0 26 19 1.44
45114--45140 14 1.9 14 100 0 54 51 3 0 44 1.19
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
45284--45317 17 2.0 17 100 0 68 47 11 11 29 1.76
45797--45841 22 2.0 22 100 0 90 64 4 22 8 1.40
46388--46416 14 2.1 14 100 0 58 48 6 20 24 1.74
54551--54579 14 2.1 14 100 0 58 65 6 13 13 1.45
55644--55690 21 2.2 22 84 3 60 34 6 12 46 1.67
57178--57235 17 3.5 17 75 17 68 32 3 0 63 1.11
57173--57231 15 3.9 15 85 10 84 33 5 0 61 1.18
57211--57252 21 2.0 21 95 0 75 30 4 0 64 1.14
57180--57254 15 4.5 15 72 23 51 33 4 0 62 1.14
57245--57288 16 3.1 13 81 18 52 47 0 0 52 1.00
57246--57282 16 2.3 16 100 0 74 43 0 0 56 0.99
58407--58476 34 2.1 34 100 0 140 40 5 2 51 1.40
65157--65203 23 2.0 23 100 0 94 29 4 17 48 1.65
65363--65403 21 2.0 21 90 0 64 31 29 12 26 1.92
77992--78038 12 3.9 12 82 0 58 40 0 4 55 1.19
79630--79665 18 2.0 18 100 0 72 33 5 0 61 1.19
84008--84059 23 2.3 23 96 3 97 46 7 21 25 1.77
86633--86719 21 4.1 21 93 0 138 14 28 8 48 1.73
107831--107861 16 1.9 16 100 0 62 54 0 0 45 0.99
107856--107903 15 3.3 15 80 16 64 70 2 8 18 1.22
107856--107901 14 3.2 14 84 6 65 71 2 8 17 1.21
110287--110329 21 2.2 19 87 8 59 30 0 0 69 0.88
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
110290--110339 25 2.0 25 100 0 100 32 0 0 68 0.90
111537--111609 12 6.2 12 74 16 55 47 2 0 49 1.15
111543--111653 21 5.1 21 75 15 57 50 1 1 45 1.22
111983--112030 20 2.2 23 75 21 66 33 18 10 37 1.85
111988--112030 20 2.2 20 95 0 77 32 18 11 37 1.87
115650--115693 21 2.1 21 86 0 61 34 4 0 61 1.16
115657--115701 21 2.1 21 83 0 54 35 2 2 60 1.22
125669--125699 15 2.1 15 100 0 62 25 25 19 29 1.99
147130--147216 21 4.1 21 93 0 138 48 8 28 14 1.73
149790--149841 23 2.3 23 96 3 97 25 21 7 46 1.77
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Tables: 1
The End!