NC_044416.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_044416.1 Ilex cornuta chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 157224
Tables: 1
This is table 1 of 1 ( 23 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4802--4841 20 2.0 20 85 9 55 62 2 0 35 1.09
21794--21823 15 2.0 15 93 0 51 33 13 23 30 1.93
39182--39206 12 2.1 12 100 0 50 56 0 20 24 1.43
46651--46683 17 1.9 17 93 0 57 45 9 18 27 1.79
52561--52615 27 2.0 27 96 0 101 58 7 12 21 1.59
57128--57152 13 1.9 13 100 0 50 32 4 24 40 1.73
59666--59701 18 2.0 18 100 0 72 27 11 22 38 1.88
61812--61836 12 2.1 12 100 0 50 60 24 8 8 1.52
70313--70352 21 1.9 21 94 0 71 30 22 10 37 1.87
81783--81830 24 2.0 24 87 0 69 29 31 14 25 1.95
81926--81952 13 2.1 13 100 0 54 22 7 7 62 1.46
91389--91443 24 2.5 22 85 8 67 14 23 12 49 1.78
91411--91478 21 3.2 21 77 8 75 11 22 8 57 1.61
93828--93917 18 5.2 18 92 4 132 32 7 24 35 1.84
93840--93916 9 8.6 9 69 0 55 32 9 25 32 1.87
101811--101866 28 2.0 29 85 3 78 28 5 8 57 1.52
109998--110063 32 2.1 32 97 0 123 37 27 9 25 1.86
129773--129822 13 3.8 13 80 15 57 0 24 4 72 1.02
129765--129821 27 2.1 27 87 9 82 0 24 3 71 1.01
133773--133838 32 2.1 32 97 0 123 25 9 27 37 1.86
149950--149995 9 5.1 9 78 0 56 34 28 4 32 1.77
149919--150008 18 5.2 18 92 4 132 35 24 7 32 1.84
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
152358--152447 21 4.1 22 75 8 76 54 10 23 12 1.67
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Tables: 1
The End!