NC_044891.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_044891.1 Epimedium wushanense voucher HBXS chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 157194
Tables: 1
This is table 1 of 1 ( 30 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
33252--33280 15 1.9 15 100 0 58 24 20 0 55 1.44
52718--52744 14 1.9 14 100 0 54 70 0 7 22 1.12
74318--74468 48 2.9 53 79 13 177 29 18 15 36 1.92
74371--74468 48 2.0 48 96 0 178 31 20 14 33 1.92
82088--82134 24 2.0 24 91 0 76 25 34 14 25 1.94
87220--87245 13 2.0 13 100 0 52 23 7 7 61 1.49
89332--89379 14 3.5 13 88 5 60 62 4 12 20 1.46
89712--89778 33 2.0 33 88 0 98 31 17 29 20 1.96
92084--92177 27 3.4 27 85 8 143 35 6 25 32 1.81
94750--94806 9 6.3 9 91 0 87 33 0 35 31 1.58
111030--111060 15 2.1 15 100 0 62 61 0 32 6 1.21
113507--113564 24 2.4 24 83 13 75 62 8 20 8 1.51
113711--113746 15 2.4 15 95 0 63 55 5 19 19 1.62
113916--113970 12 4.6 12 93 0 83 45 12 34 7 1.70
113978--114116 66 2.1 67 91 4 226 43 18 20 17 1.89
114071--114145 24 3.3 21 66 20 60 44 17 20 18 1.88
114081--114156 24 3.2 24 67 14 66 46 15 21 17 1.84
114071--114164 48 2.0 48 97 0 179 44 17 20 18 1.87
130548--130586 18 2.2 18 86 9 53 35 12 7 43 1.72
131557--131650 48 2.0 48 97 0 179 18 20 17 44 1.87
131605--131743 66 2.1 67 91 4 226 17 20 18 43 1.89
131751--131805 12 4.6 12 93 0 83 7 34 12 45 1.70
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
131975--132010 15 2.4 15 95 0 63 19 19 5 55 1.62
132048--132124 33 2.3 33 84 4 93 24 24 7 42 1.81
132157--132214 24 2.4 25 80 16 77 8 20 8 62 1.51
134661--134691 15 2.1 15 100 0 62 6 32 0 61 1.21
150915--150971 9 6.3 9 91 0 87 31 35 0 33 1.58
153544--153637 27 3.4 27 85 8 143 32 25 6 35 1.81
155943--156009 33 2.0 33 88 0 98 20 29 17 31 1.96
156342--156389 14 3.5 13 86 8 60 20 12 4 62 1.46
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Tables: 1
The End!