NC_045241.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_045241.1 Curcuma wenyujin voucher CUR09 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 162266
Tables: 1
This is table 1 of 1 ( 80 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
1356--1395 20 2.0 20 100 0 80 60 10 5 25 1.49
3438--3466 14 2.1 14 100 0 58 72 6 0 20 1.07
6048--6081 17 2.0 17 100 0 68 23 17 17 41 1.90
6247--6272 13 2.0 13 100 0 52 15 0 30 53 1.42
7303--7327 13 1.9 13 100 0 50 72 12 0 16 1.13
7852--7899 16 2.9 16 85 11 62 45 4 0 50 1.21
13649--13738 16 5.8 15 83 10 78 61 0 4 34 1.16
13825--13855 15 2.1 14 94 5 53 35 0 0 64 0.94
13973--14028 23 2.5 22 91 2 85 66 0 1 32 1.03
13971--14014 15 2.9 15 87 9 63 65 0 0 34 0.93
14003--14053 14 3.7 14 92 7 79 62 0 5 31 1.19
14003--14056 26 2.0 26 80 16 58 62 0 7 29 1.22
16605--16631 14 1.9 14 100 0 54 62 7 7 22 1.46
25197--25244 21 2.3 21 92 0 78 18 18 18 43 1.88
27574--27634 2 32.5 2 74 23 53 49 3 0 47 1.18
27568--27621 17 2.9 17 89 10 72 44 5 0 50 1.25
27548--27630 23 3.7 23 78 12 82 46 4 1 46 1.31
27574--27628 21 2.7 21 81 15 71 49 3 0 47 1.19
27575--27634 28 2.2 26 85 11 77 50 3 0 46 1.18
29235--29272 20 1.9 20 94 0 67 63 5 10 21 1.46
30291--30347 16 3.6 16 95 2 98 33 19 7 40 1.78
31713--31744 15 2.1 15 100 0 64 21 6 12 59 1.55
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
31813--31877 29 2.2 29 91 0 103 46 15 18 20 1.84
32558--32609 2 27.0 2 78 21 58 46 0 3 50 1.20
32558--32609 7 7.6 7 79 12 54 46 0 3 50 1.20
32558--32602 9 4.9 9 86 5 54 46 0 2 51 1.13
32575--32618 20 2.2 20 87 0 61 47 2 9 40 1.48
33583--33624 21 2.0 21 85 0 57 35 14 9 40 1.78
34309--34354 23 2.0 23 100 0 92 52 0 8 39 1.33
43722--43760 19 2.1 19 100 0 78 38 25 5 30 1.78
47892--47973 2 43.0 2 76 9 82 53 0 1 45 1.08
47902--47967 9 6.6 10 77 16 57 54 0 0 45 0.99
47900--47967 11 6.5 11 79 14 74 54 0 0 45 0.99
47892--47975 23 3.7 23 87 6 109 53 0 1 45 1.08
48008--48038 15 2.1 15 93 0 53 16 6 9 67 1.39
48256--48286 13 2.5 13 94 5 55 48 29 0 22 1.51
48548--48612 2 33.0 2 81 3 78 49 6 0 44 1.27
53102--53159 12 4.9 12 97 2 109 50 0 0 50 1.00
53170--53208 20 2.0 20 100 0 78 46 10 0 43 1.37
53176--53226 16 3.2 16 71 17 52 52 3 0 43 1.19
53175--53224 11 4.6 11 76 14 59 52 4 0 44 1.20
61865--61900 13 2.8 13 91 4 56 44 0 0 55 0.99
61908--61974 30 2.3 30 87 7 93 38 4 0 56 1.19
61917--61974 15 4.2 14 73 16 50 36 5 0 58 1.20
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
61970--62004 18 1.9 18 88 11 54 48 2 0 48 1.16
62043--62089 23 2.0 23 84 8 60 51 6 0 42 1.27
62143--62174 16 2.0 16 100 0 64 56 0 12 31 1.37
66331--66372 21 2.0 21 81 9 50 21 9 16 52 1.72
67872--67932 15 4.1 15 75 12 72 49 0 8 42 1.32
67882--67961 32 2.6 31 83 11 94 46 1 8 43 1.42
67988--68015 13 2.2 13 100 0 56 71 0 21 7 1.09
70691--70726 18 2.0 18 100 0 72 38 0 5 55 1.23
70684--70730 25 1.9 24 82 4 58 40 0 4 55 1.19
70837--70901 21 3.1 21 88 0 103 35 24 7 32 1.84
74464--74511 19 2.5 19 100 0 96 33 18 6 41 1.76
74978--75006 14 2.1 14 100 0 58 34 6 6 51 1.55
82392--82440 24 2.0 24 92 0 80 28 32 12 26 1.92
83616--83666 22 2.2 23 86 6 68 9 3 7 78 1.07
83724--83771 24 2.0 24 95 0 87 25 10 12 52 1.71
85468--85503 18 2.0 18 100 0 72 38 11 5 44 1.63
85469--85517 18 2.9 17 88 11 66 42 6 8 42 1.59
89738--89833 50 1.9 50 97 0 183 42 17 9 30 1.81
92377--92438 21 2.8 22 90 7 90 14 25 11 48 1.77
92398--92445 21 2.3 21 92 0 78 12 31 8 47 1.71
93682--93724 21 2.0 21 90 0 68 32 9 25 32 1.88
94876--94923 24 2.0 24 87 0 69 31 10 25 33 1.89
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
103429--103476 23 2.1 23 96 0 87 41 8 4 45 1.53
114623--114664 21 2.0 21 90 0 66 52 7 26 14 1.67
119434--119499 28 2.3 30 82 15 86 45 0 6 48 1.27
119456--119510 28 2.0 28 85 0 74 45 0 3 50 1.19
124585--124631 9 5.3 9 82 14 62 38 0 0 61 0.96
124586--124629 14 3.2 14 84 9 56 38 0 0 61 0.96
124559--124631 12 6.7 12 79 17 63 32 0 0 67 0.91
134645--134686 21 2.0 21 90 0 66 14 26 7 52 1.67
145833--145880 23 2.1 23 96 0 87 45 4 8 41 1.53
154386--154454 24 2.9 24 76 8 70 34 26 7 31 1.84
155585--155627 21 2.0 21 90 0 68 32 25 9 32 1.88
156864--156932 21 3.1 22 85 8 86 49 10 27 13 1.73
156871--156932 21 2.7 23 90 7 92 48 11 25 14 1.77
159476--159571 50 1.9 50 97 0 183 30 9 17 42 1.81
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Tables: 1
The End!