NC_045252.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_045252.1 Lindera aggregata voucher PDBK TC2016-0766 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 152664
Tables: 1
This is table 1 of 1 ( 23 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
1826--1855 15 2.0 15 93 0 51 56 6 3 33 1.42
3895--3919 12 2.1 12 100 0 50 60 8 16 16 1.58
31980--32019 20 2.0 20 85 9 55 52 7 0 40 1.30
31986--32015 15 2.0 15 100 0 60 53 6 0 40 1.27
33568--33606 15 2.5 15 91 4 60 43 12 5 38 1.65
34963--34995 17 1.9 17 93 0 57 57 0 30 12 1.35
48564--48595 13 2.4 13 94 5 55 59 12 18 9 1.59
50712--50747 18 2.0 18 100 0 72 11 50 0 38 1.38
71704--71748 21 2.1 21 87 0 63 33 26 11 28 1.91
92606--92694 21 4.1 21 82 5 99 13 26 10 49 1.74
94264--94307 21 2.1 21 83 8 54 31 15 25 27 1.96
95057--95113 24 2.4 24 100 0 114 33 8 24 33 1.86
102115--102148 4 8.8 4 87 6 52 17 0 0 82 0.67
102119--102149 15 2.1 15 93 0 53 16 0 0 83 0.64
102119--102176 8 7.4 8 78 16 50 13 6 1 77 1.05
112201--112240 19 2.1 19 100 0 80 32 35 0 32 1.58
117947--117973 13 2.1 13 100 0 54 33 7 7 51 1.58
129357--129397 18 2.2 19 86 4 57 19 7 9 63 1.48
132561--132614 18 3.0 18 91 0 90 11 12 11 64 1.49
134153--134192 19 2.1 19 100 0 80 32 0 35 32 1.58
144245--144278 4 8.8 4 87 6 52 82 0 0 17 0.67
144244--144274 15 2.1 15 93 0 53 83 0 0 16 0.64
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
151280--151336 24 2.4 24 100 0 114 33 24 8 33 1.86
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Tables: 1
The End!