NC_045887.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_045887.1 Celosia cristata cultivar Xiaguang chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 153472
Tables: 1
This is table 1 of 1 ( 33 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
5073--5126 12 5.0 12 78 17 57 55 0 9 35 1.32
5057--5125 30 2.3 28 81 18 86 52 0 10 37 1.36
7397--7429 17 2.0 17 88 5 50 63 12 6 18 1.48
8586--8623 15 2.3 18 86 13 55 60 5 0 34 1.19
23114--23151 19 2.0 19 100 0 76 26 10 10 52 1.68
31747--31771 13 1.9 13 100 0 50 28 16 0 56 1.41
31815--31860 20 2.3 20 85 11 67 41 8 2 47 1.46
32392--32426 16 2.2 16 100 0 70 51 0 11 37 1.38
37338--37377 20 2.0 20 100 0 80 50 15 5 30 1.65
42986--43026 15 2.7 15 92 0 64 43 17 4 34 1.70
43846--43886 20 2.0 20 100 0 82 65 9 14 9 1.46
46988--47025 20 2.0 20 84 5 51 31 0 2 65 1.06
51523--51559 18 2.1 18 100 0 74 16 10 24 48 1.77
57930--57985 26 2.2 25 93 3 94 50 10 7 32 1.64
57936--57985 26 1.9 26 100 0 100 44 12 8 36 1.71
59891--59933 18 2.2 20 80 20 63 65 0 18 16 1.28
59897--59933 18 2.1 18 100 0 74 64 0 18 16 1.29
63994--64027 16 2.1 17 94 5 61 14 14 0 70 1.17
66165--66204 20 2.0 20 100 0 80 55 0 15 30 1.41
68022--68060 20 2.0 20 100 0 78 25 17 0 56 1.41
68544--68574 15 2.1 15 100 0 62 54 0 6 38 1.26
72002--72027 13 2.0 13 100 0 52 53 0 7 38 1.30
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
86299--86323 12 2.1 12 100 0 50 44 0 24 32 1.54
89302--89358 24 2.4 24 100 0 114 15 24 12 47 1.80
91719--91779 18 3.4 18 90 0 104 26 11 26 36 1.90
91710--91781 36 2.0 36 91 0 117 27 9 25 37 1.87
110200--110241 22 1.9 22 85 9 59 42 14 14 28 1.84
114185--114236 26 2.0 26 100 0 104 46 11 15 26 1.80
119289--119324 17 2.1 17 100 0 72 52 0 11 36 1.37
146667--146738 36 2.0 36 91 0 117 37 25 9 27 1.87
146669--146729 18 3.4 18 90 0 104 36 26 11 26 1.90
149090--149146 24 2.4 24 100 0 114 47 12 24 15 1.80
152125--152149 12 2.1 12 100 0 50 32 24 0 44 1.54
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Tables: 1
The End!