NC_045948.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_045948.1 Sinapis alba chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 153760
Tables: 1
This is table 1 of 1 ( 35 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4544--4608 33 2.1 33 83 13 84 47 1 6 44 1.37
4571--4625 25 2.2 25 77 6 58 40 5 5 49 1.49
4604--4636 17 1.9 17 100 0 66 30 12 3 54 1.52
4608--4646 17 2.3 17 86 0 51 35 10 2 51 1.50
6249--6291 19 2.3 19 96 4 79 37 9 0 53 1.33
7898--7974 23 3.5 21 75 13 75 46 1 0 51 1.09
7867--7929 26 2.4 27 76 7 67 39 1 0 58 1.07
7912--7974 15 4.6 14 81 14 62 46 1 0 52 1.10
13346--13394 21 2.3 22 89 7 82 42 6 6 44 1.54
30085--30158 25 3.0 25 100 0 148 44 12 10 32 1.76
31591--31623 17 2.0 17 94 5 59 48 6 12 33 1.65
35568--35651 22 3.8 24 72 15 74 52 2 5 39 1.39
35613--35652 11 3.6 11 82 0 53 57 0 2 40 1.12
41443--41467 6 4.2 6 100 0 50 20 0 32 48 1.50
45900--45946 17 2.8 17 75 21 53 21 6 0 72 1.07
59797--59846 24 2.1 24 96 0 91 34 18 12 36 1.87
62450--62483 16 2.1 16 94 0 59 58 8 5 26 1.51
67136--67175 21 1.9 21 84 0 53 35 20 10 35 1.86
84218--84256 20 2.0 20 89 0 60 33 10 12 43 1.77
88408--88490 21 3.8 22 84 7 89 14 22 10 51 1.73
88430--88497 21 3.2 21 83 8 84 13 22 8 55 1.65
90847--90904 18 3.4 17 88 6 75 32 6 22 37 1.81
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
107059--107119 32 1.9 32 96 0 113 40 24 9 24 1.85
113286--113332 3 15.0 3 91 8 76 63 0 4 31 1.13
113287--113330 22 2.0 22 95 4 79 63 0 4 31 1.14
113286--113332 16 3.0 16 96 3 87 63 0 4 31 1.13
114812--114851 19 2.1 19 100 0 80 52 15 5 27 1.63
120078--120108 15 2.1 15 100 0 62 48 19 6 25 1.72
130148--130208 32 1.9 32 96 0 113 24 9 24 40 1.85
146363--146408 18 2.6 18 92 0 74 34 23 8 32 1.86
146363--146420 18 3.4 17 88 6 66 37 22 6 32 1.81
148771--148859 21 4.1 21 84 8 83 53 10 22 13 1.69
148785--148859 21 3.4 22 85 9 91 53 12 20 14 1.72
148798--148859 24 2.7 23 87 7 83 51 12 20 14 1.75
153011--153049 20 2.0 20 89 0 60 43 12 10 33 1.77
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Tables: 1
The End!