NC_046473.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_046473.1 Fritillaria delavayi plastid, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 151948
Tables: 1
This is table 1 of 1 ( 25 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
3296--3323 14 2.0 14 100 0 56 42 7 21 28 1.79
7544--7577 17 2.0 17 100 0 68 52 5 0 41 1.25
8698--8793 47 2.0 48 97 2 185 42 8 22 26 1.82
27804--27863 26 2.3 26 77 11 68 48 1 1 48 1.21
27822--27861 13 3.1 13 89 10 64 50 0 0 50 1.00
30028--30057 13 2.3 13 100 0 60 53 0 0 46 1.00
30195--30225 13 2.4 13 94 0 53 54 3 3 38 1.32
30356--30380 11 2.3 11 100 0 50 44 0 0 56 0.99
44030--44075 23 2.0 23 83 8 58 56 6 0 36 1.25
44210--44250 17 2.4 17 84 8 57 51 0 0 48 1.00
44224--44250 12 2.2 12 100 0 54 48 0 0 51 1.00
44269--44307 19 2.0 20 95 5 71 56 5 15 23 1.59
45853--45878 13 2.0 13 100 0 52 46 15 0 38 1.46
54122--54154 15 2.1 16 88 5 50 21 0 6 72 1.05
56366--56426 24 2.4 24 75 8 59 42 6 1 49 1.38
76793--76841 24 2.0 24 88 0 71 26 32 14 26 1.94
79240--79276 18 2.1 18 89 0 56 21 2 10 64 1.37
86521--86568 21 2.3 21 96 0 87 12 33 8 45 1.72
88861--88941 24 3.4 24 94 0 144 32 8 23 35 1.85
110459--110509 22 2.3 23 79 3 59 33 3 3 58 1.35
122816--122845 15 2.0 15 93 0 51 43 10 0 46 1.37
124818--124848 15 2.1 15 93 0 53 38 6 6 48 1.55
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
144691--144771 24 3.4 24 94 0 144 35 23 8 32 1.85
147064--147111 21 2.2 22 92 7 89 45 8 33 12 1.72
147071--147125 21 2.5 21 88 8 74 43 10 29 16 1.82
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Tables: 1
The End!