NC_046685.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_046685.1 Curcuma kwangsiensis plastid, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 159439
Tables: 1
This is table 1 of 1 ( 77 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
1356--1395 20 2.0 20 100 0 80 60 10 5 25 1.49
4834--4860 12 2.2 12 100 0 54 40 0 0 59 0.98
6060--6093 17 2.0 17 100 0 68 23 17 17 41 1.90
7315--7339 13 1.9 13 100 0 50 72 12 0 16 1.13
7858--7905 16 2.9 16 85 11 62 45 4 0 50 1.21
7841--7923 15 5.7 15 73 18 50 45 2 1 50 1.22
13652--13695 16 2.8 16 93 3 72 68 0 0 31 0.90
13812--13842 15 2.1 14 94 5 53 35 0 0 64 0.94
13966--14021 23 2.5 22 91 2 85 66 0 1 32 1.03
13964--14007 15 2.9 15 87 9 63 65 0 0 34 0.93
13996--14046 14 3.7 14 92 7 79 62 0 5 31 1.19
13996--14049 26 2.0 26 80 16 58 62 0 7 29 1.22
16606--16632 14 1.9 14 100 0 54 62 7 7 22 1.46
25180--25227 21 2.3 21 92 0 78 18 18 18 43 1.88
27550--27588 12 3.1 12 88 7 51 38 7 0 53 1.30
27568--27615 2 25.5 2 76 19 50 54 2 0 43 1.12
27556--27615 14 4.6 14 87 8 67 50 3 0 46 1.18
27568--27614 18 2.7 19 87 12 66 55 2 0 42 1.12
29216--29253 20 1.9 20 94 0 67 63 5 10 21 1.46
30328--30384 16 3.6 16 92 2 89 33 17 7 42 1.76
31750--31781 15 2.1 15 100 0 64 21 6 12 59 1.55
31850--31914 29 2.2 29 91 0 103 46 15 18 20 1.84
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
32592--32633 2 21.0 2 81 18 52 47 0 4 47 1.23
32592--32633 7 5.2 8 83 16 52 47 0 4 47 1.23
32599--32633 11 3.4 11 84 15 56 48 0 5 45 1.26
32575--32633 20 3.3 18 83 9 68 47 1 5 45 1.34
32592--32633 20 2.1 20 95 0 75 47 0 4 47 1.23
32598--32642 20 2.2 20 88 0 63 48 2 8 40 1.47
33626--33667 21 2.0 21 85 0 57 35 14 9 40 1.78
47890--47966 2 40.0 2 76 7 79 54 0 1 44 1.08
47911--47966 23 2.6 21 84 13 78 58 0 0 41 0.98
48007--48037 15 2.1 15 93 0 53 16 6 9 67 1.39
48255--48285 13 2.5 13 94 5 55 48 29 0 22 1.51
48451--48493 22 2.0 22 100 0 86 46 16 4 32 1.67
48451--48488 12 3.3 12 78 14 53 47 15 5 31 1.68
48569--48632 2 32.0 2 87 0 92 48 4 0 46 1.23
53130--53163 12 2.9 12 95 4 61 50 0 0 50 1.00
53370--53406 18 2.1 18 94 0 65 62 0 21 16 1.33
54062--54103 21 2.0 21 100 0 84 42 9 23 23 1.83
61883--61918 13 2.8 13 91 4 56 44 0 0 55 0.99
61926--61995 30 2.4 30 83 7 90 38 5 0 55 1.24
61994--62028 18 1.9 18 88 11 54 48 2 0 48 1.16
62067--62113 23 2.0 23 84 8 60 51 6 0 42 1.27
62167--62198 16 2.0 16 100 0 64 56 0 12 31 1.37
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
66289--66330 21 2.0 21 81 9 50 21 9 16 52 1.72
67820--67880 15 4.1 15 75 12 72 49 0 8 42 1.32
67830--67909 32 2.6 31 83 11 94 46 1 8 43 1.42
67936--67963 13 2.2 13 100 0 56 71 0 21 7 1.09
70030--70079 25 2.0 25 100 0 100 56 8 16 20 1.65
70791--70855 21 3.1 21 88 0 103 35 24 7 32 1.84
74917--74945 14 2.1 14 100 0 58 34 6 6 51 1.55
82339--82387 24 2.0 24 92 0 80 28 32 12 26 1.92
83563--83613 22 2.2 23 86 6 68 9 3 7 78 1.07
83671--83718 24 2.0 24 95 0 87 25 10 12 52 1.71
85217--85270 22 2.5 22 79 11 58 27 5 0 66 1.13
85228--85264 16 2.2 16 90 4 56 27 2 0 70 1.01
85415--85450 18 2.0 18 100 0 72 38 11 5 44 1.63
85416--85464 18 2.9 17 88 11 66 42 6 8 42 1.59
89684--89779 50 1.9 50 97 0 183 42 17 9 30 1.81
92323--92384 21 2.8 22 90 7 90 14 25 11 48 1.77
92344--92391 21 2.3 21 92 0 78 12 31 8 47 1.71
93628--93670 21 2.0 21 90 0 68 32 9 25 32 1.88
94822--94869 24 2.0 24 87 0 69 31 10 25 33 1.89
103368--103415 23 2.1 23 96 0 87 41 8 4 45 1.53
116657--116705 19 2.4 21 86 6 66 44 0 6 48 1.27
116650--116705 23 2.4 22 80 11 67 44 0 5 50 1.25
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
117408--117442 16 2.2 16 89 0 52 62 0 2 34 1.10
121777--121814 9 4.4 9 83 12 53 36 0 0 63 0.95
121778--121815 14 2.8 14 88 4 51 36 0 0 63 0.95
121740--121816 11 7.2 11 80 11 72 28 1 0 70 0.96
131825--131866 21 2.0 21 90 0 66 14 26 7 52 1.67
143013--143060 23 2.1 23 96 0 87 45 4 8 41 1.53
151559--151627 24 2.9 24 76 8 70 34 26 7 31 1.84
152758--152800 21 2.0 21 90 0 68 32 25 9 32 1.88
154037--154105 21 3.1 22 85 8 86 49 10 27 13 1.73
154044--154105 21 2.7 23 90 7 92 48 11 25 14 1.77
156649--156744 50 1.9 50 97 0 183 30 9 17 42 1.81
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Tables: 1
The End!