NC_046786.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_046786.1 Pistacia chinensis chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 160618
Tables: 1
This is table 1 of 1 ( 46 repeats found )
Click on indices to view alignment
Table Explanation
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
446--474 10 2.7 11 89 10 51 65 0 17 17 1.27
2206--2252 21 2.2 21 96 0 85 53 2 17 27 1.55
3884--3925 20 2.1 20 100 0 84 35 9 19 35 1.84
4046--4086 20 2.0 20 95 0 73 24 0 17 58 1.38
4895--4925 16 1.9 16 93 0 53 45 12 0 41 1.42
8067--8105 19 2.1 19 100 0 78 51 10 17 20 1.74
11631--11660 15 2.0 15 100 0 60 60 6 0 33 1.23
16131--16161 14 2.2 14 94 0 53 16 3 12 67 1.35
17184--17208 13 1.9 13 100 0 50 24 8 0 68 1.16
34354--34379 12 2.2 12 100 0 52 57 7 0 34 1.27
39342--39383 15 2.6 16 78 21 52 64 4 4 26 1.33
39718--39742 13 1.9 13 100 0 50 16 16 28 40 1.89
45604--45628 12 2.1 12 100 0 50 32 8 8 52 1.60
48371--48458 38 2.3 38 100 0 176 38 17 20 23 1.93
50908--50959 26 2.0 26 100 0 104 50 11 11 26 1.73
59971--60003 12 2.5 13 85 14 50 54 15 3 27 1.55
59992--60025 17 2.0 17 100 0 68 58 11 5 23 1.55
62560--62586 13 2.1 13 100 0 54 40 7 7 44 1.60
68898--68940 21 2.0 21 90 0 68 37 18 25 18 1.94
71182--71223 20 2.1 20 100 0 84 57 0 19 23 1.41
74079--74130 27 1.9 27 96 0 95 61 5 7 25 1.45
78785--78810 13 2.0 13 100 0 52 15 15 30 38 1.88
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
79327--79372 18 2.6 18 92 0 74 71 13 2 13 1.23
80742--80778 18 2.1 18 100 0 74 35 16 0 48 1.46
85891--85930 20 2.0 20 100 0 80 35 10 15 40 1.80
85935--85970 18 2.0 18 100 0 72 33 5 5 55 1.46
93190--93243 24 2.2 25 90 3 83 11 24 7 57 1.58
95608--95703 18 5.3 18 96 0 174 30 10 26 33 1.90
103445--103479 17 2.1 17 94 0 61 5 8 0 85 0.73
103653--103717 31 2.1 31 100 0 130 30 15 12 41 1.84
104004--104041 18 2.1 18 90 0 58 23 7 7 60 1.51
108578--108649 38 1.9 37 94 2 126 31 22 25 20 1.98
112176--112236 31 2.0 31 96 0 113 39 22 9 27 1.86
113776--113811 18 2.0 18 94 0 63 55 13 8 22 1.65
118059--118097 17 2.3 17 95 0 69 64 5 10 20 1.44
119214--119240 13 2.1 13 100 0 54 33 14 7 44 1.73
124633--124668 18 2.0 18 100 0 72 55 16 27 0 1.42
129255--129288 17 2.0 17 100 0 68 23 5 23 47 1.73
135179--135214 18 2.0 18 94 0 63 22 8 13 55 1.65
136754--136814 31 2.0 31 96 0 113 27 9 22 39 1.86
140341--140412 38 1.9 37 94 2 126 20 25 22 31 1.98
144949--144986 18 2.1 18 90 0 58 60 7 7 23 1.51
145273--145337 31 2.1 31 100 0 130 41 12 15 30 1.84
145511--145545 17 2.1 17 94 0 61 85 0 8 5 0.73
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
153287--153382 18 5.3 18 96 0 174 33 26 10 30 1.90
155747--155800 24 2.2 25 90 3 83 57 7 24 11 1.58
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!