NC_046788.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_046788.1 Aesculus chinensis voucher ACHIN20171209 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 155528
Tables: 1
This is table 1 of 1 ( 27 repeats found )
Click on indices to view alignment
Table Explanation
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
3654--3695 20 2.1 20 95 0 75 38 9 16 35 1.81
9860--9903 16 2.6 17 89 7 72 25 13 4 56 1.56
22861--22892 15 2.1 15 100 0 64 37 12 6 43 1.68
28121--28157 19 1.9 19 94 0 65 21 10 13 54 1.69
28621--28666 17 2.6 17 89 3 65 65 2 21 10 1.35
31934--31962 12 2.3 13 94 5 51 51 0 17 31 1.45
47606--47648 15 2.9 15 92 0 68 41 20 13 23 1.88
48317--48350 16 2.1 16 100 0 68 58 11 11 17 1.62
51815--51858 22 2.0 22 100 0 88 13 13 9 63 1.51
55850--55881 16 2.0 16 93 0 55 12 21 9 56 1.64
68952--68990 21 1.9 21 94 5 71 30 25 10 33 1.89
90061--90112 21 2.5 21 93 0 86 7 23 11 57 1.59
92489--92542 18 3.2 18 89 7 78 31 7 24 37 1.83
100581--100618 18 2.1 18 100 0 76 21 10 10 57 1.61
104940--105014 38 2.0 37 94 2 132 33 22 24 20 1.97
114627--114676 25 2.0 25 100 0 100 52 0 12 36 1.39
114950--115014 14 4.9 14 78 12 66 10 18 0 70 1.15
114950--115016 26 2.5 27 88 7 93 10 19 0 70 1.16
115105--115136 16 2.0 16 93 0 55 25 15 6 53 1.65
126110--126177 30 2.3 29 87 7 100 23 17 22 36 1.94
126123--126190 30 2.3 30 94 0 118 23 19 19 38 1.93
129287--129329 21 2.0 21 100 0 86 46 9 23 20 1.79
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
136004--136078 38 2.0 37 94 2 132 20 24 22 33 1.97
140400--140437 18 2.1 18 100 0 76 57 10 10 21 1.61
148476--148517 18 2.3 18 95 0 75 33 26 9 30 1.88
148476--148529 18 3.2 17 89 7 67 37 24 7 31 1.83
150906--150959 21 2.6 21 90 0 90 59 11 22 7 1.56
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!