NC_047175.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_047175.1 Gymnema sylvestre chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 161170
Tables: 1
This is table 1 of 1 ( 90 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
99--320 6 36.3 6 65 20 52 40 1 3 54 1.24
206--242 15 2.4 16 82 13 51 51 0 0 48 1.00
238--324 10 8.3 10 75 14 77 41 0 4 54 1.21
217--347 44 2.7 50 79 19 161 44 0 5 50 1.24
201--325 22 5.5 22 85 14 150 44 0 3 52 1.17
215--329 6 19.2 6 65 19 53 45 0 3 51 1.18
6738--6772 18 1.9 18 100 0 70 51 17 5 25 1.67
6778--6803 13 2.0 13 100 0 52 61 0 23 15 1.33
7732--7768 18 2.1 18 89 0 56 37 5 5 51 1.48
9050--9182 20 6.3 20 65 23 67 39 2 6 51 1.41
9053--9204 30 5.0 30 76 12 107 41 1 7 49 1.42
9160--9216 30 1.9 30 85 7 80 47 1 5 45 1.35
10479--10524 22 2.1 22 100 0 92 30 21 0 47 1.51
15033--15073 21 2.0 21 100 0 82 21 14 4 58 1.55
17469--17494 13 2.0 13 100 0 52 46 7 15 30 1.74
20440--20473 15 2.3 15 94 0 59 32 5 8 52 1.56
20487--20533 15 3.3 15 85 11 71 46 4 2 46 1.34
20478--20531 13 4.0 13 81 9 63 42 5 1 50 1.36
20478--20533 28 2.0 28 89 0 85 42 5 1 50 1.35
20489--20546 28 2.1 28 83 6 73 51 3 1 43 1.28
20526--20559 15 2.5 13 90 9 50 67 0 0 32 0.91
20578--20629 26 2.0 26 100 0 104 42 3 11 42 1.59
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
20610--20644 18 2.0 18 94 5 63 40 5 20 34 1.76
35126--35163 18 2.1 18 100 0 76 42 21 5 31 1.75
36643--36681 17 2.3 17 100 0 78 53 5 12 28 1.60
37180--37209 13 2.3 13 100 0 60 33 13 0 53 1.40
42579--42618 20 2.0 20 95 0 71 40 7 30 22 1.81
48152--48200 19 2.7 18 87 12 73 71 0 0 28 0.86
48151--48202 13 4.2 12 77 22 54 73 0 0 26 0.84
48152--48208 19 3.1 18 82 12 71 71 0 1 26 0.95
48265--48322 14 4.1 14 100 0 116 44 6 20 27 1.77
50835--50865 15 2.1 15 93 0 53 61 3 19 16 1.48
52064--52109 17 2.6 18 82 6 67 41 2 2 54 1.25
57082--57108 14 1.9 14 100 0 54 37 7 3 51 1.48
58729--58779 16 3.3 15 83 8 66 37 5 11 45 1.65
63293--63334 21 2.0 21 100 0 84 47 9 0 42 1.36
63698--63732 17 2.1 17 100 0 70 34 5 17 42 1.73
64590--64784 102 1.9 103 93 6 338 39 7 23 29 1.82
64590--64785 54 3.8 53 90 4 303 39 7 23 29 1.82
64765--64847 21 4.0 21 98 0 157 44 4 22 27 1.73
65941--65973 16 2.1 16 100 0 66 39 18 6 36 1.75
73271--73302 15 2.1 15 100 0 64 53 12 0 34 1.39
73920--73963 22 2.0 22 100 0 88 50 4 9 36 1.55
74044--74075 16 1.9 17 93 6 57 28 12 6 53 1.62
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
74836--74881 6 7.7 6 90 0 74 56 26 17 0 1.41
78035--78084 12 3.8 13 80 17 59 46 10 0 44 1.37
88950--88977 14 2.0 14 100 0 56 57 0 0 42 0.99
90684--90722 17 2.3 17 81 0 51 43 0 0 56 0.99
95741--95888 24 6.4 24 92 3 200 13 27 10 48 1.74
95741--95937 24 8.8 22 89 3 168 12 26 10 50 1.72
95763--95944 42 4.1 43 81 8 154 12 25 9 52 1.69
98289--98345 18 3.2 18 97 0 105 29 8 28 33 1.87
98277--98303 12 2.2 12 100 0 54 33 7 33 25 1.84
98388--98424 18 2.1 18 94 0 65 32 10 35 21 1.88
99625--99721 24 4.0 24 100 0 194 38 8 32 20 1.82
114109--114171 31 2.0 31 93 0 108 42 20 9 26 1.83
115505--115543 19 2.1 19 95 0 69 51 10 2 35 1.50
116360--116400 12 3.4 12 100 0 82 51 0 41 7 1.30
116494--116526 12 2.8 12 95 0 57 51 0 45 3 1.16
116368--116634 126 2.1 126 98 0 516 40 13 28 17 1.87
118557--118595 20 2.0 20 85 10 53 56 23 0 20 1.42
119280--119334 25 2.2 25 87 9 85 27 18 0 54 1.44
119278--119329 14 3.9 14 78 19 58 26 17 0 55 1.42
119798--119839 15 2.9 14 82 13 50 73 0 7 19 1.05
120073--120105 16 2.1 16 100 0 66 51 0 12 36 1.39
120575--120620 10 5.2 10 71 28 50 45 0 23 30 1.53
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
120574--120620 17 2.8 17 100 0 94 46 0 23 29 1.52
127463--127520 8 6.6 9 75 13 50 20 5 1 72 1.13
130331--130369 19 2.1 19 90 0 60 30 25 12 30 1.93
131448--131475 9 3.1 9 100 0 56 10 10 10 67 1.42
131460--131498 21 2.0 21 85 10 55 12 10 7 69 1.37
132300--132324 12 2.1 12 100 0 50 8 32 0 60 1.26
134109--134300 15 12.8 15 96 0 303 8 13 10 67 1.43
134476--134636 27 6.0 27 94 0 250 26 16 11 45 1.81
134530--134629 12 7.6 12 75 18 92 27 12 11 50 1.73
134488--134620 15 9.7 14 70 19 102 25 15 11 47 1.79
135654--135686 12 2.8 12 95 0 57 3 45 0 51 1.16
135546--135812 126 2.1 126 98 0 516 17 28 13 40 1.87
135780--135833 24 2.4 23 87 9 76 5 46 0 48 1.25
135780--135820 12 3.4 12 100 0 82 7 41 0 51 1.30
136637--136675 19 2.1 19 95 0 69 35 2 10 51 1.50
138009--138071 31 2.0 31 93 0 108 26 9 20 42 1.83
152459--152555 24 4.0 24 100 0 194 20 32 8 38 1.82
153756--153792 18 2.1 18 94 0 65 21 35 10 32 1.88
153877--153903 12 2.2 12 100 0 54 25 33 7 33 1.84
153835--153891 18 3.2 18 97 0 105 33 28 8 29 1.87
156254--156349 21 4.6 21 89 5 115 56 11 21 10 1.64
156236--156439 24 9.0 24 86 9 157 51 9 25 12 1.70
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
156239--156439 48 4.4 48 80 12 212 51 9 26 12 1.71
156236--156439 72 3.0 67 83 9 204 51 9 25 12 1.70
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Tables: 1
The End!