NC_047193.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_047193.1 Capparis spinosa var. spinosa chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 157796
Tables: 1
This is table 1 of 1 ( 50 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
98--124 13 2.1 13 100 0 54 14 14 14 55 1.70
5199--5233 17 2.1 17 100 0 70 22 17 5 54 1.64
8497--8547 22 2.3 22 93 6 86 62 3 3 29 1.31
8507--8552 13 3.8 13 72 21 55 63 4 6 26 1.38
10159--10204 24 1.9 24 90 0 74 21 2 0 76 0.90
10168--10206 20 2.0 20 89 0 60 17 2 0 79 0.84
10248--10282 17 2.1 17 94 0 61 42 0 8 48 1.33
10305--10331 13 2.1 13 100 0 54 29 0 0 70 0.88
14319--14346 14 2.0 14 100 0 56 50 7 0 42 1.30
29865--29895 12 2.5 13 94 5 55 25 6 0 67 1.14
30000--30060 20 3.0 20 95 0 113 42 19 1 36 1.61
33389--33447 29 2.0 29 100 0 118 33 10 13 42 1.78
33862--33891 15 2.0 15 100 0 60 46 13 6 33 1.69
36960--37006 23 2.0 23 100 0 94 57 4 17 21 1.56
37880--37918 2 20.0 2 89 5 62 51 0 0 48 1.00
48043--48082 20 2.0 20 100 0 80 45 15 0 40 1.46
52331--52467 8 17.4 8 72 15 90 48 2 0 48 1.16
52368--52414 3 16.7 3 78 12 55 40 0 0 59 0.97
52351--52408 11 5.2 11 87 2 80 43 0 0 56 0.99
52368--52414 14 3.4 14 80 16 53 40 0 0 59 0.97
52418--52464 14 3.3 14 90 3 76 53 6 0 40 1.27
52326--52473 17 9.4 16 79 11 112 49 3 0 47 1.18
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
56710--56739 15 2.0 15 100 0 60 73 6 6 13 1.24
69942--69978 18 2.1 18 100 0 74 67 0 0 32 0.91
81658--81705 24 2.0 24 91 0 78 25 25 16 33 1.96
82223--82248 13 2.0 13 100 0 52 61 23 0 15 1.33
82947--83022 12 6.2 12 74 22 70 47 0 1 51 1.09
82945--83013 17 3.8 18 73 22 72 47 0 0 52 1.00
82945--83013 29 2.6 26 84 9 86 47 0 0 52 1.00
83073--83105 15 2.1 16 94 5 59 36 6 0 57 1.23
83107--83148 21 2.0 21 100 0 84 33 19 0 47 1.49
91492--91587 24 4.3 22 88 6 115 12 21 11 54 1.69
91514--91605 21 4.2 21 84 4 103 13 22 8 55 1.65
93964--94006 18 2.4 18 92 0 68 32 6 23 37 1.82
96915--96959 22 2.0 22 100 0 90 51 4 0 44 1.21
102196--102228 17 1.9 17 93 0 57 24 9 6 60 1.49
102193--102237 22 2.0 23 91 4 74 24 8 6 60 1.51
110404--110465 32 1.9 32 96 0 115 41 24 9 24 1.84
115691--115734 19 2.3 19 80 4 52 79 2 2 15 0.93
120294--120318 11 2.3 11 100 0 50 52 8 8 32 1.60
126193--126239 23 2.0 23 100 0 94 51 12 4 31 1.59
134031--134092 32 1.9 32 96 0 115 24 9 24 41 1.84
142268--142300 17 1.9 17 93 0 57 60 6 9 24 1.49
142259--142303 22 2.0 23 91 4 74 60 6 8 24 1.51
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
147537--147581 22 2.0 22 100 0 90 44 0 4 51 1.21
147541--147578 11 3.5 11 79 13 51 50 0 2 47 1.15
150490--150532 18 2.4 18 92 0 68 37 23 6 32 1.82
152892--153004 24 5.1 21 86 4 93 53 9 23 13 1.68
152909--152982 21 3.4 20 79 17 85 55 10 21 12 1.67
152919--153004 24 3.7 24 89 4 124 52 11 22 13 1.73
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Tables: 1
The End!