NC_047244.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_047244.1 Rauvolfia serpentina chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 155102
Tables: 1
This is table 1 of 1 ( 48 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
5827--5854 12 2.3 12 100 0 56 21 25 0 53 1.46
5977--6029 16 3.3 16 100 0 106 49 7 11 32 1.67
15993--16025 17 2.0 16 94 5 57 18 15 0 66 1.25
29639--29718 7 10.4 8 79 16 57 42 3 1 52 1.27
29648--29720 15 4.8 16 77 14 75 42 4 0 53 1.20
29596--29719 28 4.4 27 76 15 101 40 3 4 52 1.36
32038--32069 16 2.0 16 100 0 64 37 12 6 43 1.68
32044--32082 16 2.4 16 86 0 51 43 12 2 41 1.56
32413--32500 31 2.8 30 81 8 97 52 0 14 32 1.42
32404--32457 24 2.3 23 84 12 74 53 0 11 35 1.36
32431--32486 18 3.4 18 75 22 61 48 0 17 33 1.48
32477--32503 14 1.9 14 100 0 54 59 0 14 25 1.36
45068--45109 7 6.6 7 79 20 56 64 0 9 26 1.24
45068--45109 19 2.2 19 100 0 84 64 0 9 26 1.24
45564--45594 15 2.1 15 93 0 53 61 3 19 16 1.48
46966--46994 10 3.0 10 95 5 51 31 10 0 58 1.31
47373--47421 5 9.8 5 79 16 57 20 0 2 77 0.87
47386--47419 8 4.2 8 85 14 52 23 0 0 76 0.79
47369--47431 18 3.5 19 82 10 71 25 0 1 73 0.93
47373--47419 24 2.0 24 87 8 69 21 0 2 76 0.89
47370--47426 16 3.7 16 81 15 75 22 0 1 75 0.90
47437--47488 23 2.2 24 82 3 70 46 0 7 46 1.31
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
47443--47477 17 2.1 17 100 0 70 45 0 11 42 1.40
47466--47518 27 2.0 27 84 0 70 54 0 3 41 1.18
47523--47580 25 2.2 26 81 12 64 31 5 5 58 1.42
51761--51805 23 1.9 24 86 4 65 71 2 8 17 1.23
53444--53478 15 2.2 16 90 5 54 40 5 8 45 1.58
65089--65118 15 2.0 15 100 0 60 20 6 26 46 1.75
65694--65730 18 2.1 18 89 0 56 27 16 0 56 1.40
67086--67112 13 2.1 13 100 0 54 22 14 7 55 1.64
69532--69572 21 2.0 21 90 0 64 31 26 7 34 1.84
71720--71749 14 2.1 14 100 0 60 56 6 16 20 1.62
73536--73568 8 4.2 8 92 7 59 48 0 0 51 1.00
90193--90247 24 2.5 22 85 8 67 14 23 12 49 1.78
90215--90282 21 3.2 21 77 8 75 11 22 8 57 1.61
92619--92657 18 2.2 18 95 0 69 33 7 25 33 1.84
108426--108488 31 2.0 31 93 0 108 42 20 9 26 1.83
109586--109614 14 2.1 14 100 0 58 44 6 6 41 1.58
113526--113569 13 3.1 13 77 22 52 29 13 9 47 1.74
113534--113567 17 2.0 17 100 0 68 23 11 11 52 1.70
115130--115176 14 3.3 14 96 3 85 23 0 6 70 1.10
121459--121522 22 2.8 24 80 17 73 46 0 1 51 1.10
121456--121522 17 3.9 17 72 14 57 47 0 1 50 1.10
121450--121530 31 2.6 30 81 13 85 49 0 1 49 1.08
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
130856--130884 14 2.1 14 100 0 58 41 6 6 44 1.58
131982--132044 31 2.0 31 93 0 108 26 9 20 42 1.83
147813--147851 18 2.2 18 95 0 69 33 25 7 33 1.84
150188--150277 21 4.1 22 75 8 76 54 10 23 12 1.67
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Tables: 1
The End!