NC_047245.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_047245.1 Withania somnifera chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 155365
Tables: 1
This is table 1 of 1 ( 32 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4915--4940 13 2.0 13 100 0 52 23 15 0 61 1.33
6258--6290 16 2.1 16 100 0 66 48 0 0 51 1.00
6260--6309 16 3.0 17 85 8 59 58 0 0 42 0.98
8510--8556 8 6.0 8 90 5 78 12 21 0 65 1.25
8493--8556 31 2.1 31 82 11 78 15 21 0 62 1.32
8511--8556 15 3.0 15 93 6 83 13 19 0 67 1.23
13704--13738 16 2.2 16 100 0 70 25 31 0 42 1.55
16689--16721 17 2.0 16 94 5 57 18 15 0 66 1.25
28002--28030 13 2.2 13 100 0 58 58 0 6 34 1.25
33441--33470 15 2.0 15 100 0 60 40 0 6 53 1.27
43443--43471 14 2.1 14 100 0 58 20 37 0 41 1.53
63963--64001 19 2.1 19 95 0 69 25 15 17 41 1.89
67556--67581 12 2.2 12 100 0 52 61 7 15 15 1.55
68343--68395 25 2.3 22 81 12 54 30 3 7 58 1.43
69637--69683 22 2.1 22 100 0 94 36 12 4 46 1.62
70580--70611 16 2.0 16 100 0 64 31 6 25 37 1.81
91080--91169 21 4.1 21 78 9 83 13 21 10 55 1.66
93522--93581 18 3.3 18 88 0 93 31 10 25 33 1.89
101316--101377 22 2.7 24 80 12 76 35 3 9 51 1.51
109092--109157 32 2.1 32 94 0 114 42 22 9 25 1.83
113289--113327 20 2.0 20 85 10 53 56 23 0 20 1.42
114088--114135 24 2.0 24 100 0 96 29 16 16 37 1.91
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
114323--114350 14 2.0 14 100 0 56 35 7 7 50 1.57
119244--119295 21 2.5 21 90 3 79 44 13 5 36 1.68
120452--120486 17 2.1 17 100 0 70 54 0 5 40 1.24
128670--128729 28 2.2 28 85 11 81 0 23 5 71 1.05
128670--128727 14 4.3 14 72 20 52 0 24 3 72 1.00
128677--128737 28 2.2 27 83 13 72 0 21 6 72 1.07
132469--132534 32 2.1 32 94 0 114 25 9 22 42 1.83
140249--140310 22 2.7 24 80 12 76 51 9 3 35 1.51
148045--148104 18 3.3 18 88 0 93 33 25 10 31 1.89
150457--150546 21 4.1 22 77 8 85 55 10 21 13 1.66
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Tables: 1
The End!