NC_047247.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_047247.1 Piper longum chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 160457
Tables: 1
This is table 1 of 1 ( 45 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
1948--1982 18 1.9 18 100 0 70 28 8 22 40 1.84
4532--4579 7 6.6 7 81 9 60 83 0 0 16 0.65
4532--4579 15 3.2 15 96 0 87 83 0 0 16 0.65
4529--4577 20 2.3 21 83 16 66 79 0 0 20 0.73
5281--5316 18 2.0 18 100 0 72 27 11 16 44 1.82
6455--6480 13 2.0 13 100 0 52 23 15 7 53 1.67
6961--7005 21 2.1 21 83 0 54 44 4 13 37 1.64
12258--12290 16 2.1 16 100 0 66 39 18 0 42 1.50
30064--30121 28 2.1 28 100 0 116 62 3 10 24 1.43
32169--32222 25 2.2 25 100 0 108 42 12 7 37 1.72
34579--34636 27 2.2 27 82 11 68 44 6 5 43 1.53
37649--37673 12 2.1 12 100 0 50 24 8 0 68 1.16
49318--49366 24 2.3 21 83 16 57 44 8 8 38 1.64
49312--49359 24 2.0 24 100 0 96 45 8 8 37 1.64
52371--52401 15 2.1 15 93 0 53 38 12 22 25 1.90
53755--53780 13 2.0 13 100 0 52 38 15 15 30 1.88
53858--53886 13 2.2 13 100 0 58 37 0 13 48 1.43
60491--60537 23 2.0 23 100 0 94 31 12 0 55 1.38
60529--60581 17 3.5 17 69 30 57 52 0 3 43 1.19
64976--65024 16 3.1 16 100 0 98 32 0 18 48 1.48
64977--65020 7 5.7 7 80 19 52 31 0 15 52 1.44
69533--69584 17 3.1 17 100 0 104 30 17 0 51 1.45
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
69592--69656 14 4.7 14 78 1 51 60 0 7 32 1.25
69598--69652 10 5.3 10 82 8 74 61 0 7 30 1.23
69588--69652 22 3.0 21 78 13 71 61 0 7 30 1.24
79870--79911 17 2.5 17 88 7 59 69 2 4 23 1.20
79869--79911 16 2.5 18 81 11 54 69 2 4 23 1.18
87089--87126 20 1.9 20 100 0 76 34 7 10 47 1.67
91520--91550 15 2.1 15 100 0 62 19 32 0 48 1.49
93792--93875 24 3.6 24 87 9 138 14 22 11 51 1.75
93792--93883 45 2.1 45 93 2 159 13 23 10 52 1.71
96270--96347 15 4.7 17 70 15 65 34 7 24 33 1.84
96266--96341 24 3.2 24 98 0 143 35 7 22 34 1.83
104101--104133 16 2.1 16 94 0 57 30 12 3 54 1.52
105022--105058 14 2.6 14 95 0 65 32 13 0 54 1.40
125350--125392 22 2.0 22 85 0 59 18 20 4 55 1.60
131372--131438 13 4.8 13 75 17 55 37 1 0 61 1.05
131369--131410 21 2.0 21 100 0 84 28 4 0 66 1.12
131549--131579 14 2.2 14 100 0 62 22 6 0 70 1.09
144383--144419 14 2.6 14 95 0 65 54 0 13 32 1.40
145308--145340 16 2.1 16 94 0 57 54 3 12 30 1.52
153100--153175 24 3.2 24 98 0 143 34 22 7 35 1.83
155566--155649 24 3.6 24 87 9 138 51 11 22 14 1.75
155558--155649 45 2.1 44 93 2 157 52 10 23 13 1.71
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
157891--157921 15 2.1 15 100 0 62 48 0 32 19 1.49
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Tables: 1
The End!