NC_047251.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_047251.1 Astragalus gummifer chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 123425
Tables: 1
This is table 1 of 1 ( 43 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4420--4445 13 2.0 13 100 0 52 61 7 0 30 1.24
4426--4463 20 1.9 19 85 15 51 65 2 0 31 1.06
4447--4507 19 2.9 19 73 17 59 54 0 1 44 1.10
4447--4507 22 2.8 21 75 20 63 54 0 1 44 1.10
14943--14967 12 2.1 12 100 0 50 60 0 8 32 1.26
18737--18813 15 5.3 15 80 9 70 54 0 0 45 0.99
19302--19344 21 2.0 21 95 0 77 41 9 30 18 1.82
24916--24945 15 2.1 14 93 6 51 56 0 6 36 1.26
29200--29226 13 2.1 13 100 0 54 62 0 7 29 1.22
29204--29256 16 3.1 17 82 15 56 58 0 5 35 1.22
29670--29710 14 3.0 14 76 16 50 58 2 2 36 1.24
47822--47879 14 4.1 14 78 20 50 68 3 0 27 1.05
53524--53605 11 7.7 11 73 20 52 37 1 2 58 1.19
53559--53605 5 9.4 5 78 17 53 40 0 2 57 1.11
53561--53605 9 5.3 9 82 12 60 40 0 2 57 1.11
54240--54278 11 3.5 11 89 0 51 28 0 0 71 0.86
56638--56685 17 2.8 18 81 15 57 47 0 2 50 1.12
63824--63868 15 3.1 15 83 3 65 60 4 6 28 1.42
65133--65236 9 11.2 9 83 6 127 40 0 0 57 1.11
65138--65234 14 7.1 14 81 15 69 40 1 1 57 1.12
65133--65225 18 5.1 18 96 3 161 39 0 0 60 0.97
65331--65369 21 1.9 21 89 5 62 33 20 7 38 1.81
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
83058--83089 10 3.3 10 95 4 57 53 0 0 46 1.00
83098--83152 10 5.8 10 74 20 55 45 0 0 54 0.99
83058--83167 49 2.2 49 80 6 125 50 0 1 48 1.11
83249--83288 16 2.4 16 87 8 53 57 2 0 40 1.12
83166--83487 147 2.2 147 99 0 635 50 2 7 39 1.43
83270--83487 38 5.8 38 72 14 168 50 2 7 39 1.43
83279--83339 19 3.2 19 63 9 52 47 3 9 39 1.53
83396--83435 16 2.4 16 87 8 53 57 2 0 40 1.12
83426--83486 19 3.2 19 63 9 52 47 3 9 39 1.53
89553--89578 13 2.0 13 100 0 52 15 15 30 38 1.88
97462--97496 11 3.2 11 87 0 52 42 8 25 22 1.82
104145--104296 15 10.1 15 71 19 111 57 13 0 29 1.37
104073--104226 51 3.1 51 84 7 199 54 11 0 34 1.36
104226--104371 48 3.0 47 75 16 145 55 13 0 31 1.38
104251--104371 48 2.5 48 93 4 206 54 12 0 33 1.38
104320--104344 12 2.1 12 100 0 50 68 16 0 16 1.22
104110--104344 121 2.0 115 92 6 393 57 12 0 30 1.36
120143--120174 16 2.0 16 100 0 64 50 0 0 50 1.00
120195--120228 18 1.9 18 94 5 61 38 8 0 52 1.33
120845--120907 20 3.1 19 78 14 56 38 1 1 58 1.17
120862--120926 29 2.2 30 78 8 71 46 1 1 50 1.20
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Tables: 1
The End!