NC_047365.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_047365.1 Clitoria ternatea voucher Yi14421-KUN plastid, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 151673
Tables: 1
This is table 1 of 1 ( 39 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4617--4660 18 2.4 18 85 11 54 70 4 6 18 1.27
4970--5027 17 3.2 18 78 7 73 39 1 6 51 1.39
5048--5100 3 18.0 3 77 11 56 33 3 0 62 1.13
5103--5140 19 2.0 19 100 0 76 42 0 5 52 1.24
5221--5245 12 2.1 12 100 0 50 44 8 0 48 1.32
5315--5363 11 4.4 11 82 5 62 28 2 10 59 1.41
14711--14752 17 2.5 17 84 0 57 40 7 7 45 1.59
15512--15540 7 4.3 7 91 8 51 72 0 0 27 0.85
15513--15538 13 2.0 13 100 0 52 76 0 0 23 0.78
18769--18794 13 2.0 13 100 0 52 46 7 7 38 1.61
19481--19518 19 2.0 19 85 10 51 71 0 15 13 1.16
29015--29044 13 2.4 12 94 5 51 43 0 0 56 0.99
31644--31673 16 1.9 15 93 6 51 83 0 10 6 0.81
53611--53642 13 2.4 14 85 15 50 50 0 0 50 1.00
53611--53642 15 2.1 15 94 0 55 50 0 0 50 1.00
53640--53680 18 2.4 17 91 4 64 63 0 14 21 1.30
58354--58387 17 2.1 16 88 5 50 44 0 0 55 0.99
59828--59854 13 2.1 13 100 0 54 44 14 0 40 1.46
60299--60337 21 1.9 20 89 5 60 38 7 20 33 1.81
61612--61663 7 7.3 7 75 12 52 44 0 3 51 1.19
61603--61665 29 2.2 29 85 5 83 44 1 3 50 1.27
61628--61675 24 2.0 24 92 8 80 47 0 8 43 1.33
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
62927--62992 32 2.1 32 100 0 132 33 9 9 48 1.66
68177--68206 11 2.7 11 94 0 51 56 3 0 40 1.16
69467--69512 20 2.3 20 96 3 85 47 15 4 32 1.65
74064--74089 12 2.2 12 100 0 52 50 0 0 50 1.00
79602--79640 18 2.1 19 90 4 62 46 0 0 53 1.00
89657--89698 21 2.0 21 95 0 75 38 4 30 26 1.77
90809--90843 9 3.9 9 92 0 52 40 2 25 31 1.70
92653--92690 21 2.0 20 85 15 53 86 2 0 10 0.66
93358--93395 19 2.0 19 100 0 76 36 10 15 36 1.82
109942--109979 20 1.9 20 84 10 51 55 23 0 21 1.44
111763--111802 19 2.1 19 100 0 80 35 10 10 45 1.71
116870--116907 18 2.1 18 90 0 58 47 5 5 42 1.48
121564--121597 17 2.0 17 88 0 50 47 0 5 47 1.26
123812--123836 12 2.1 12 100 0 50 16 16 0 68 1.22
141595--141632 19 2.0 19 100 0 76 36 15 10 36 1.82
144138--144181 9 4.9 9 91 0 52 29 27 4 38 1.76
145292--145333 21 2.0 21 95 0 75 26 30 4 38 1.77
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Tables: 1
The End!