NC_047384.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_047384.1 Butea monosperma voucher Yi15241-KUN plastid, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 151874
Tables: 1
This is table 1 of 1 ( 42 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
12909--12938 14 2.1 14 100 0 60 60 0 13 26 1.34
17828--17859 16 2.1 16 94 5 57 15 6 0 78 0.95
17872--17951 15 4.9 15 78 17 79 62 1 1 35 1.11
17921--17952 2 17.0 2 87 12 50 53 0 0 46 1.00
17877--17952 9 9.0 9 88 5 81 60 1 1 36 1.13
17880--17952 13 5.3 15 71 21 52 60 1 1 36 1.14
24214--24266 13 4.2 13 80 9 74 43 1 0 54 1.11
24214--24286 37 2.0 35 89 5 110 38 4 0 57 1.18
24217--24268 2 28.5 2 80 18 60 44 1 0 53 1.11
28940--28968 12 2.4 12 100 0 58 62 10 6 20 1.50
29488--29535 20 2.5 19 83 9 62 45 6 2 45 1.40
29498--29538 20 2.1 19 95 4 73 46 4 0 48 1.23
32647--32673 13 2.1 13 100 0 54 40 7 7 44 1.60
33545--33577 16 2.1 16 100 0 66 36 0 6 57 1.23
34423--34460 19 2.0 19 89 0 58 42 13 7 36 1.73
38455--38484 14 2.1 14 93 0 51 53 10 0 36 1.35
53296--53320 13 1.9 13 100 0 50 64 20 8 8 1.46
57041--57073 14 2.3 15 89 5 50 21 3 0 75 0.93
64949--64975 13 2.1 13 100 0 54 22 7 0 70 1.12
79769--79815 19 2.4 20 92 7 87 29 10 4 55 1.53
79776--79825 15 3.1 15 88 11 64 32 8 6 54 1.54
79861--79889 11 2.7 11 94 5 51 55 0 0 44 0.99
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
81234--81268 17 2.1 17 100 0 70 40 0 0 60 0.97
81236--81281 17 3.0 15 87 9 58 47 0 0 52 1.00
84192--84226 2 17.5 2 100 0 70 48 0 0 51 1.00
88659--88726 21 3.0 22 76 8 66 14 20 7 57 1.61
89945--90028 21 4.0 21 95 0 150 35 4 28 30 1.78
89945--90028 42 2.0 42 100 0 168 35 4 28 30 1.78
91143--91182 9 4.4 9 93 0 71 35 10 30 25 1.88
98634--98683 19 2.6 19 93 0 82 20 10 24 46 1.81
108081--108131 25 2.0 25 96 0 93 58 11 9 19 1.60
110278--110315 20 1.9 20 84 10 51 55 23 2 18 1.55
113309--113343 17 2.1 17 100 0 70 28 5 37 28 1.80
118338--118387 19 2.6 19 83 0 64 62 4 0 34 1.14
125775--125804 15 2.0 15 93 0 51 43 0 0 56 0.99
127285--127335 25 2.0 25 96 0 93 19 9 11 58 1.60
136733--136782 19 2.6 19 93 0 82 46 24 10 20 1.81
144234--144273 9 4.4 9 93 0 71 25 30 10 35 1.88
145388--145471 21 4.0 21 95 0 150 30 28 4 35 1.78
145388--145471 42 2.0 42 100 0 168 30 28 4 35 1.78
146690--146736 21 2.2 21 84 0 58 59 6 21 12 1.55
151190--151224 2 17.5 2 100 0 70 51 0 0 48 1.00
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Tables: 1
The End!