NC_047406.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_047406.1 Polygonatum kingianum chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 155399
Tables: 1
This is table 1 of 1 ( 39 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
6017--6051 11 3.2 11 100 0 70 65 0 17 17 1.27
7256--7280 12 2.1 12 100 0 50 44 8 8 40 1.63
7924--7954 15 2.1 15 100 0 62 16 25 0 58 1.38
9113--9151 10 3.9 10 82 0 51 61 10 0 28 1.28
9112--9151 20 2.0 20 100 0 80 60 10 0 30 1.30
9440--9536 2 53.0 2 70 20 70 45 0 2 52 1.12
9422--9520 10 10.9 10 68 24 51 46 0 1 52 1.07
9422--9537 16 7.1 16 75 14 85 46 0 1 51 1.11
9411--9557 34 4.4 35 72 19 111 42 2 1 54 1.20
35830--35859 14 2.1 14 100 0 60 20 6 23 50 1.71
44788--44817 15 2.0 15 93 0 51 43 0 36 20 1.52
46703--46758 16 3.7 16 76 13 73 39 7 5 48 1.54
50901--50956 27 2.0 28 86 10 80 53 10 3 32 1.53
51034--51067 13 2.6 14 90 9 54 38 0 0 61 0.96
57168--57194 14 1.9 14 100 0 54 62 7 14 14 1.51
58148--58193 21 2.2 21 84 0 56 36 2 15 45 1.58
60817--60846 10 3.1 10 90 9 53 63 6 0 30 1.20
61105--61138 12 2.7 13 90 9 61 29 8 0 61 1.26
68207--68247 21 2.0 21 90 4 66 68 4 2 24 1.22
68323--68366 21 2.1 21 91 0 70 31 25 11 31 1.91
79669--79714 24 1.9 24 90 0 74 26 34 13 26 1.92
82512--82548 19 1.9 19 94 0 65 27 5 2 64 1.28
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
86852--86903 23 2.3 23 96 3 97 46 7 21 25 1.77
89339--89452 21 5.1 21 86 9 138 13 26 10 50 1.73
89339--89445 45 2.4 45 95 0 187 14 26 11 48 1.76
91805--91871 24 3.6 18 74 25 59 32 7 22 37 1.82
91812--91864 24 2.2 24 96 0 97 33 9 22 33 1.86
100815--100852 18 2.1 18 100 0 76 34 15 0 50 1.45
113563--113595 17 2.0 16 94 5 57 30 6 18 45 1.73
114368--114403 11 3.5 11 78 21 51 38 0 5 55 1.23
114364--114415 19 2.7 19 93 3 86 36 0 3 59 1.16
121335--121376 17 2.3 18 80 16 50 47 11 4 35 1.61
128042--128070 15 1.9 15 100 0 58 34 6 6 51 1.55
138785--138822 18 2.1 18 100 0 76 50 0 15 34 1.45
147766--147832 24 3.6 18 74 25 59 37 22 7 32 1.82
147773--147825 24 2.2 24 96 0 97 33 22 9 33 1.86
150189--150295 45 2.4 45 96 0 196 49 11 25 14 1.75
150182--150295 21 5.1 21 86 9 147 50 10 25 13 1.73
152731--152782 23 2.3 23 96 3 97 25 21 7 46 1.77
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Tables: 1
The End!