NC_047468.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_047468.1 Terminalia chebula chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 159932
Tables: 1
This is table 1 of 1 ( 42 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
143--193 22 2.3 22 100 0 102 27 7 5 58 1.49
361--400 16 2.5 16 95 0 71 40 5 0 55 1.22
5642--5677 18 2.0 18 100 0 72 27 16 5 50 1.68
7416--7466 22 2.3 23 89 3 77 37 9 7 45 1.67
9455--9505 23 2.2 23 89 10 77 62 1 5 29 1.29
9695--9735 18 2.3 18 86 0 64 56 0 4 39 1.21
9756--9796 20 2.0 20 100 0 82 34 9 4 51 1.56
11667--11700 16 2.1 16 100 0 68 58 0 5 35 1.22
15866--15916 23 2.2 23 79 6 59 74 0 5 19 1.02
16082--16117 17 2.1 18 89 5 56 25 2 0 72 0.98
16062--16122 15 4.0 15 71 10 52 21 6 0 72 1.07
22582--22611 15 2.0 15 93 0 51 36 13 16 33 1.88
29093--29132 20 2.0 20 100 0 80 35 5 0 60 1.19
34158--34182 12 2.1 12 100 0 50 48 0 16 36 1.46
34190--34220 15 2.1 15 100 0 62 41 12 0 45 1.42
34567--34603 18 2.1 18 100 0 74 37 0 5 56 1.22
35105--35144 16 2.5 16 79 0 53 32 0 10 57 1.32
38677--38706 14 2.1 14 100 0 60 43 13 6 36 1.70
39329--39396 28 2.6 25 80 13 73 57 2 1 38 1.23
39333--39396 19 3.5 19 74 20 73 59 1 1 37 1.16
39433--39466 16 2.1 16 100 0 68 32 11 5 50 1.63
47890--47925 18 2.0 18 94 0 63 36 0 0 63 0.94
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
49105--49143 17 2.3 17 100 0 78 0 5 10 84 0.76
49160--49201 22 1.9 22 100 0 84 54 0 9 35 1.33
49516--49554 16 2.4 16 95 0 69 38 7 0 53 1.30
50193--50223 15 2.1 15 93 0 53 38 6 6 48 1.55
54356--54389 17 2.0 17 100 0 68 52 11 17 17 1.73
54450--54492 15 2.8 15 92 3 68 23 6 0 69 1.12
67382--67435 26 2.1 26 100 0 108 37 9 14 38 1.79
69397--69428 16 1.9 17 93 6 57 75 3 18 3 1.08
70530--70560 15 2.1 15 100 0 62 25 25 6 41 1.79
71972--72005 17 2.0 17 100 0 68 64 0 5 29 1.17
75497--75535 19 2.0 20 90 5 62 58 12 0 28 1.34
83968--84006 20 2.0 20 90 5 62 20 25 10 43 1.83
93249--93314 21 3.2 21 82 2 80 12 22 7 57 1.60
95692--95736 18 2.5 18 100 0 90 33 6 31 28 1.83
114711--114739 12 2.4 12 100 0 58 72 6 0 20 1.07
117133--117164 16 2.0 16 93 0 55 50 0 9 40 1.35
120597--120647 24 2.1 24 100 0 102 58 3 9 27 1.47
152567--152611 18 2.5 18 100 0 90 28 31 6 33 1.83
152567--152610 9 4.9 9 80 0 52 29 31 4 34 1.78
154988--155077 21 4.1 21 81 4 81 55 8 22 13 1.65
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Tables: 1
The End!