NC_047470.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_047470.1 Rubia cordifolia chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 153555
Tables: 1
This is table 1 of 1 ( 41 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
5816--5867 4 13.5 4 84 8 63 67 0 1 30 1.02
5794--5867 30 2.5 30 85 8 91 66 1 1 31 1.09
5794--5863 18 3.6 19 83 11 81 65 1 1 31 1.10
14017--14046 15 1.9 16 93 6 53 16 6 0 76 0.99
26945--26990 23 2.0 23 100 0 92 56 8 8 26 1.58
26948--26990 13 3.5 13 81 18 65 60 6 9 23 1.51
28685--28711 12 2.2 12 100 0 54 66 0 0 33 0.92
29486--29519 16 2.2 16 89 5 52 76 2 2 17 1.04
29529--29616 2 44.0 2 78 17 94 44 2 3 50 1.31
31594--31659 2 34.0 2 73 11 57 53 3 1 42 1.25
31594--31683 31 3.0 30 79 10 87 55 2 3 38 1.29
31643--31682 12 3.2 12 86 13 55 60 0 7 32 1.25
31639--31683 16 2.9 15 90 6 63 60 0 6 33 1.23
36266--36295 15 2.0 15 100 0 60 40 20 20 20 1.92
39957--39985 15 1.9 15 100 0 58 17 27 34 20 1.95
41945--41980 18 2.0 18 88 0 54 69 0 8 22 1.15
42229--42256 14 2.0 14 100 0 56 64 14 7 14 1.48
44044--44089 17 2.7 17 82 0 56 28 4 0 67 1.10
44112--44160 7 7.6 7 73 17 52 38 0 0 61 0.96
44112--44166 19 2.8 19 83 8 67 36 1 0 61 1.06
44114--44161 9 5.1 9 79 16 53 37 0 0 62 0.95
46241--46307 13 5.1 13 74 25 61 64 4 0 31 1.14
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
46240--46285 19 2.3 20 88 3 67 63 6 0 30 1.20
46248--46316 30 2.3 31 90 7 108 63 2 1 31 1.18
46385--46415 15 2.0 16 93 6 55 51 0 6 41 1.27
49133--49158 12 2.2 12 100 0 52 23 0 15 61 1.33
49208--49239 15 2.1 15 100 0 64 21 6 18 53 1.67
51731--51759 11 2.7 11 94 5 51 37 10 10 41 1.73
59028--59133 53 2.0 53 96 0 194 31 16 12 40 1.85
63042--63091 18 3.0 16 80 11 64 44 2 12 42 1.53
67301--67341 21 2.0 21 95 0 73 31 24 7 36 1.83
88114--88152 18 2.2 18 90 0 60 15 25 10 48 1.76
88131--88197 21 3.1 21 77 10 73 11 20 8 58 1.60
90543--90586 18 2.4 18 92 0 70 34 4 25 36 1.76
97782--97822 20 2.0 20 100 0 82 56 9 9 24 1.62
125796--125858 30 2.1 30 100 0 126 17 12 12 57 1.66
126547--126599 15 3.5 15 75 14 56 1 20 1 75 0.99
139120--139160 20 2.0 20 100 0 82 24 9 9 56 1.62
146356--146399 18 2.4 18 92 0 70 36 25 4 34 1.76
148746--148811 21 3.2 21 80 6 73 57 9 21 12 1.62
148790--148828 18 2.2 18 90 0 60 48 10 25 15 1.76
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Tables: 1
The End!