NC_047472.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_047472.1 Asparagus racemosus chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 156742
Tables: 1
This is table 1 of 1 ( 36 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
8284--8325 21 2.0 21 95 0 75 33 11 0 54 1.37
8300--8380 28 3.0 26 86 12 110 39 7 0 53 1.29
8783--8843 21 3.0 21 90 4 99 32 9 1 55 1.42
12542--12575 17 2.0 17 100 0 68 41 5 5 47 1.52
13023--13071 19 2.6 19 93 3 82 69 4 0 26 1.06
13019--13078 25 2.5 24 82 12 63 66 5 0 28 1.12
13029--13081 27 2.0 27 82 14 65 71 1 0 26 0.96
13086--13111 13 2.0 13 100 0 52 53 7 15 23 1.67
14345--14399 27 2.0 27 100 0 110 14 25 10 49 1.76
27364--27392 7 4.3 7 91 8 51 41 0 13 44 1.44
27366--27391 13 2.0 13 100 0 52 38 0 15 46 1.46
31408--31447 21 2.0 20 90 5 62 65 0 20 15 1.28
36350--36379 14 2.1 14 100 0 60 20 6 23 50 1.71
46886--46943 27 2.0 29 87 9 84 53 3 0 43 1.17
46948--47003 28 2.0 28 96 0 103 66 10 3 19 1.37
47167--47209 22 2.0 22 91 8 72 39 0 0 60 0.97
47169--47232 34 1.9 32 87 6 92 46 0 0 53 1.00
47211--47238 12 2.3 12 100 0 56 53 0 0 46 1.00
47282--47316 17 2.1 17 100 0 70 37 11 5 45 1.64
51267--51306 18 2.2 18 95 0 71 70 5 0 25 1.08
51267--51345 25 3.2 24 71 18 72 67 6 1 25 1.22
52227--52252 11 2.4 11 100 0 52 65 15 19 0 1.27
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
58880--58925 21 2.2 21 100 0 92 34 4 17 43 1.69
69574--69606 15 2.1 16 88 5 50 27 12 0 60 1.32
80514--80562 24 2.0 24 88 0 71 30 32 10 26 1.89
87658--87709 23 2.3 23 96 3 97 46 7 21 25 1.77
90304--90372 21 3.3 21 97 0 129 13 30 8 47 1.72
92721--92766 24 1.9 24 95 0 83 34 8 19 36 1.83
114565--114594 15 2.0 15 100 0 60 40 0 0 60 0.97
122894--122923 15 2.0 15 100 0 60 60 0 13 26 1.34
124829--124861 14 2.4 14 94 0 57 60 15 0 24 1.35
129061--129095 15 2.3 15 90 0 52 31 14 14 40 1.86
148966--149011 24 1.9 24 95 0 83 36 19 8 34 1.83
151360--151428 21 3.3 21 97 0 129 47 8 30 13 1.72
151360--151449 21 4.1 21 91 4 99 50 10 26 13 1.73
154023--154074 23 2.3 23 96 3 97 25 21 7 46 1.77
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Tables: 1
The End!