NC_047476.1.fas.2.7.7.80.10.50.500.1.html

    Tandem Repeats Finder Program written by:

    Gary Benson
    Program in Bioinformatics
    Boston University
    Version 4.09

    Please cite:
    G. Benson,
    "Tandem repeats finder: a program to analyze DNA sequences"
    Nucleic Acid Research(1999)
    Vol. 27, No. 2, pp. 573-580.

    Sequence: NC_047476.1 Justicia adhatoda chloroplast, complete genome
    Parameters: 2 7 7 80 10 50 500
    Length:  149479

    Tables:   1   

    This is table  1  of  1  ( 20 repeats found )

    Click on indices to view alignment

Table Explanation

  ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
  Indices                            Period   Copy     Consensus   Percent   Percent   Score   A    C    G    T    Entropy
                                     Size     Number   Size        Matches   Indels                                (0-2)

  3474--3503                         15       2.0      15          93        0         51      40   3    3    53   1.34

  9378--9423                         24       2.0      23          87        8         67      54   13   4    28   1.57

  12478--12515                       19       2.0      19          89        0         58      36   18   0    44   1.50

  47571--47596                       13       2.0      13          100       0         52      38   0    23   38   1.55

  58641--58684                       21       2.1      21          91        0         70      31   22   13   31   1.93

  65935--65967                       16       2.1      16          100       0         66      39   0    36   24   1.56

  66426--66456                       14       2.2      14          94        0         53      35   16   12   35   1.87

  70392--70417                       12       2.2      12          100       0         52      23   26   7    42   1.81

  77831--77877                       24       2.0      24          91        0         76      29   27   14   27   1.96

  80216--80249                       16       2.1      16          100       0         68      44   5    5    44   1.52

  81127--81165                       16       2.4      16          100       0         78      25   20   7    46   1.77

  81943--81972                       14       2.1      14          100       0         60      36   23   0    40   1.55

  87438--87492                       24       2.5      22          85        8         67      14   23   12   49   1.78

  87460--87527                       21       3.2      21          77        8         75      11   22   8    57   1.61

  105113--105173                     31       2.0      31          86        0         86      39   22   11   26   1.88

  110323--110360                     9        4.1      9           93        6         67      31   0    0    68   0.90

  110322--110362                     19       2.2      19          100       0         82      31   0    0    68   0.90

  123634--123658                     3        8.3      3           100       0         50      0    32   0    68   0.90

  126879--126939                     31       2.0      31          86        0         86      26   11   22   39   1.88

  144525--144614                     21       4.1      22          75        8         76      54   10   23   12   1.67
  ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------

    Tables:   1   

The End!