NC_048505.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_048505.1 Curcuma zedoaria chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 162135
Tables: 1
This is table 1 of 1 ( 85 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
1356--1395 20 2.0 20 100 0 80 60 10 5 25 1.49
6225--6250 13 2.0 13 100 0 52 15 0 30 53 1.42
7281--7305 13 1.9 13 100 0 50 72 12 0 16 1.13
7827--7889 22 3.0 22 76 21 71 46 4 0 49 1.23
7833--7894 14 3.9 16 82 16 76 45 4 0 50 1.23
7831--7894 27 2.2 29 82 15 80 45 4 0 50 1.22
13643--13681 16 2.4 16 95 0 69 64 0 2 33 1.08
13643--13687 16 2.9 15 90 6 56 64 0 2 33 1.06
13803--13833 15 2.1 14 94 5 53 35 0 0 64 0.94
13951--14006 23 2.5 22 91 2 85 66 0 1 32 1.03
13949--13992 15 2.9 15 87 9 63 65 0 0 34 0.93
13981--14031 14 3.7 14 92 7 79 62 0 5 31 1.19
13981--14034 26 2.0 26 80 16 58 62 0 7 29 1.22
16583--16609 14 1.9 14 100 0 54 62 7 7 22 1.46
27530--27590 2 31.5 2 74 23 51 47 3 1 47 1.28
27524--27581 19 3.1 19 87 5 82 44 5 0 50 1.24
27547--27585 14 2.9 14 92 7 64 51 5 0 43 1.24
27504--27566 25 2.6 24 76 16 67 44 6 1 47 1.38
29189--29226 20 1.9 20 94 0 67 63 5 10 21 1.46
30300--30340 16 2.6 16 92 3 66 34 19 7 39 1.80
31706--31737 15 2.1 15 100 0 64 21 6 12 59 1.55
31806--31870 29 2.2 29 91 0 103 46 15 18 20 1.84
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
32554--32595 2 21.0 2 81 18 52 47 0 4 47 1.23
32554--32595 11 4.0 11 84 12 61 47 0 4 47 1.23
32554--32595 7 5.2 8 83 16 52 47 0 4 47 1.23
32561--32604 20 2.2 20 87 0 61 47 2 9 40 1.48
33573--33614 21 2.0 21 85 0 57 35 14 9 40 1.78
47820--47899 2 42.0 2 74 9 69 52 1 1 45 1.16
47820--47901 23 3.6 22 82 9 85 52 1 1 45 1.16
47940--47970 15 2.1 15 93 0 53 16 6 9 67 1.39
48188--48218 13 2.5 13 94 5 55 48 29 0 22 1.51
48363--48393 12 2.6 12 94 0 53 38 6 0 54 1.26
48378--48451 31 2.4 31 97 2 141 44 12 5 37 1.65
48384--48436 17 3.3 17 65 24 51 47 11 7 33 1.68
48427--48469 22 2.0 22 100 0 86 46 16 4 32 1.67
48427--48464 12 3.3 12 78 14 53 47 15 5 31 1.68
48547--48592 23 2.0 23 91 0 74 50 6 0 43 1.28
48545--48593 2 25.0 2 79 4 55 48 6 0 44 1.27
52964--53015 10 5.1 10 79 11 61 34 19 0 46 1.50
52959--53000 21 2.0 21 100 0 84 38 19 0 42 1.51
52990--53049 27 2.4 25 78 15 70 38 16 0 45 1.48
53108--53141 12 2.9 12 95 4 61 50 0 0 50 1.00
59529--59589 30 2.0 30 100 0 122 60 3 6 29 1.38
61846--61881 13 2.8 13 91 4 56 44 0 0 55 0.99
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
61889--61955 30 2.3 30 87 7 93 38 4 0 56 1.19
61898--61955 15 4.2 14 73 16 50 36 5 0 58 1.20
61951--61985 18 1.9 18 88 11 54 48 2 0 48 1.16
62024--62070 23 2.0 23 84 8 60 51 6 0 42 1.27
62124--62155 16 2.0 16 100 0 64 56 0 12 31 1.37
67848--67911 19 3.4 19 74 10 69 46 1 9 42 1.45
67820--67905 32 2.7 32 82 12 90 46 2 8 43 1.46
67932--67959 13 2.2 13 100 0 56 71 0 21 7 1.09
70762--70826 21 3.1 21 88 0 103 35 24 7 32 1.84
74395--74442 19 2.5 19 100 0 96 33 18 6 41 1.76
74909--74937 14 2.1 14 100 0 58 34 6 6 51 1.55
82316--82364 24 2.0 24 92 0 80 28 32 12 26 1.92
83540--83590 22 2.2 23 86 6 68 9 3 7 78 1.07
83648--83695 24 2.0 24 95 0 87 25 10 12 52 1.71
85392--85427 18 2.0 18 100 0 72 38 11 5 44 1.63
85393--85441 18 2.9 17 88 11 66 42 6 8 42 1.59
89662--89757 50 1.9 50 97 0 183 42 17 9 30 1.81
92301--92362 21 2.8 22 90 7 90 14 25 11 48 1.77
92322--92369 21 2.3 21 92 0 78 12 31 8 47 1.71
93606--93648 21 2.0 21 90 0 68 32 9 25 32 1.88
94800--94845 24 1.9 24 86 0 65 28 10 26 34 1.90
103346--103393 23 2.1 23 96 0 87 41 8 4 45 1.53
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
114506--114547 21 2.0 21 90 0 66 52 7 26 14 1.67
116670--116697 13 2.2 13 100 0 56 50 0 14 35 1.43
119339--119387 19 2.4 21 86 6 66 44 0 6 48 1.27
119332--119387 23 2.4 22 80 11 67 44 0 5 50 1.25
120097--120144 10 5.1 10 87 12 75 64 0 6 29 1.18
120097--120144 19 2.6 19 96 3 89 64 0 6 29 1.18
124450--124544 10 8.9 10 76 19 70 28 1 0 70 0.94
124450--124544 9 10.0 9 74 19 52 28 1 0 70 0.94
124498--124546 14 3.6 14 81 10 57 36 0 0 63 0.95
124470--124543 12 5.7 13 75 10 71 31 0 0 68 0.89
124450--124548 11 9.2 11 82 10 100 28 1 0 70 0.94
130487--130519 14 2.4 14 100 0 66 33 0 6 60 1.21
134555--134596 21 2.0 21 90 0 66 14 26 7 52 1.67
145709--145756 23 2.1 23 96 0 87 45 4 8 41 1.53
154257--154302 24 1.9 24 86 0 65 34 26 10 28 1.90
155454--155496 21 2.0 21 90 0 68 32 25 9 32 1.88
156733--156801 21 3.1 22 85 8 86 49 10 27 13 1.73
156740--156801 21 2.7 23 90 7 92 48 11 25 14 1.77
159345--159440 50 1.9 50 97 0 183 30 9 17 42 1.81
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Tables: 1
The End!