NC_048522.1.fas.2.7.7.80.10.50.500.1.html Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: NC_048522.1 Pistia stratiotes chloroplast, complete genome Parameters: 2 7 7 80 10 50 500 Length: 164551 Tables: 1 2 This is table 1 of 2 ( 162 repeats found ) Click on indices to view alignment Table Explanation ----------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- --------- Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 5272--5313 17 2.3 18 88 8 59 33 14 0 52 1.42 5293--5320 14 2.0 14 100 0 56 42 7 0 50 1.30 5267--5359 47 2.0 46 85 10 127 37 11 0 50 1.39 5388--5472 21 4.0 21 81 9 84 67 0 1 31 0.99 5387--5460 33 2.2 34 87 2 105 66 0 1 32 1.00 5389--5478 12 7.8 12 75 14 82 65 0 1 33 1.00 5409--5472 13 4.6 13 72 24 51 65 0 0 34 0.93 5470--5546 29 2.6 30 80 17 97 54 0 1 44 1.08 5592--5644 22 2.3 23 80 6 63 60 0 1 37 1.08 5601--5679 35 2.2 37 86 8 112 67 0 1 31 0.99 5628--5678 14 3.6 14 82 7 59 68 0 0 31 0.90 5601--5680 6 13.7 6 73 15 53 67 0 1 31 0.99 5646--5683 11 3.5 11 85 7 60 76 0 0 23 0.79 5732--5773 18 2.3 20 76 23 56 47 0 2 50 1.14 5738--5776 18 2.3 16 91 8 60 46 0 2 51 1.14 9449--9487 2 19.5 2 84 10 53 53 0 2 43 1.14 9447--9495 14 3.4 14 86 13 73 57 0 2 40 1.10 9732--9791 15 3.9 14 79 16 66 41 0 3 55 1.16 9791--9860 25 2.8 24 80 4 77 44 4 0 51 1.21 9783--9841 11 5.5 11 73 16 52 44 5 0 50 1.24 9857--9896 13 3.2 13 86 10 57 40 5 7 47 1.54 9887--9924 13 3.0 13 88 3 51 52 2 2 42 1.29 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 9957--10008 9 5.6 9 86 8 61 67 1 0 30 1.02 10401--10448 15 3.1 15 82 14 53 41 6 6 45 1.54 10720--10756 18 2.1 18 100 0 74 24 21 0 54 1.45 14323--14374 19 2.8 18 85 8 61 19 0 5 75 1.01 14330--14374 18 2.4 18 85 10 56 20 0 6 73 1.05 14852--14933 13 6.7 13 68 18 59 60 0 6 32 1.21 14863--14939 7 10.4 7 70 20 50 59 0 5 35 1.20 15604--15635 16 2.0 16 93 0 55 37 21 6 34 1.79 16494--16555 18 3.4 19 80 14 69 66 9 0 24 1.22 29267--29296 15 2.0 15 100 0 60 33 13 6 46 1.69 30057--30233 26 7.5 23 66 24 59 38 0 1 59 1.08 30055--30232 14 12.2 15 72 22 84 39 0 1 58 1.08 30055--30232 62 2.9 63 79 11 156 39 0 1 58 1.08 30099--30173 13 5.8 13 76 20 61 38 0 2 58 1.12 30138--30207 3 22.0 3 83 13 79 38 0 0 61 0.96 30068--30233 45 3.6 47 77 19 147 39 0 1 59 1.08 30130--30232 32 3.3 32 83 9 122 38 0 0 60 1.04 30125--30212 29 3.0 28 82 14 99 39 0 0 60 0.97 30228--30296 26 2.6 26 80 10 70 20 2 7 69 1.25 34089--34129 15 2.7 15 100 0 82 53 0 0 46 1.00 34552--34615 17 3.3 20 75 22 66 40 0 1 57 1.08 34560--34613 26 2.1 26 82 0 63 40 0 0 59 0.98 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 34560--34642 37 2.3 36 80 12 89 44 0 1 54 1.08 34590--34682 17 5.6 17 75 19 81 55 0 1 43 1.06 34590--34665 17 4.4 17 80 11 84 52 0 1 46 1.08 34600--34663 33 2.0 33 79 14 71 53 0 1 45 1.10 34656--34697 13 3.5 13 84 12 54 69 0 0 30 0.89 34621--34721 47 2.2 46 80 13 120 63 0 0 36 0.95 34621--34723 46 2.3 46 77 12 115 64 0 0 35 0.94 39147--39179 17 1.9 17 93 0 57 72 3 0 24 0.98 49901--49960 13 4.5 13 78 16 61 58 0 6 35 1.24 49902--49960 19 3.1 19 76 11 57 59 0 6 33 1.24 50392--50425 9 3.7 9 84 7 50 32 14 0 52 1.42 50389--50425 19 1.9 19 100 0 74 32 13 0 54 1.40 50610--50701 4 22.2 4 74 14 62 33 2 0 64 1.06 50607--50654 13 3.7 13 86 8 62 27 4 0 68 1.07 50613--50659 13 3.0 17 76 23 66 29 4 0 65 1.11 50658--50744 2 47.5 2 78 17 100 44 0 0 55 0.99 50638--50748 47 2.4 44 79 13 77 41 0 0 57 1.05 50872--50949 3 27.0 3 72 25 62 35 0 0 64 0.94 50873--50949 5 15.0 5 75 18 61 36 0 0 63 0.95 50872--50948 34 2.2 35 79 9 95 35 0 0 64 0.93 50873--50947 17 4.5 17 79 12 77 36 0 0 64 0.94 52919--53019 36 2.8 37 74 15 104 28 0 1 69 1.00 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 53050--53135 35 2.6 33 80 20 92 55 3 0 40 1.17 53050--53135 21 4.0 21 74 15 68 55 3 0 40 1.17 53207--53236 15 2.0 15 93 0 51 43 0 0 56 0.99 53242--53273 10 3.4 10 83 16 50 43 0 6 50 1.27 53207--53264 7 8.0 7 77 12 55 43 1 3 51 1.28 53243--53283 18 2.3 18 87 8 57 48 0 7 43 1.30 53270--53333 11 6.0 10 77 13 56 67 0 3 29 1.06 53277--53345 11 6.2 11 75 9 59 68 0 2 28 1.04 53292--53348 17 3.4 16 76 9 60 66 0 1 31 1.02 53277--53345 22 3.1 23 81 6 88 68 0 2 28 1.04 56048--56175 21 6.1 21 96 0 238 60 0 15 23 1.34 56482--56518 18 2.1 18 100 0 74 45 10 16 27 1.80 62441--62474 17 2.0 17 94 0 59 55 8 0 35 1.31 64530--64580 26 2.0 26 84 0 66 35 13 1 49 1.54 64638--64667 14 2.1 14 93 0 51 36 10 0 53 1.35 64743--64886 13 11.5 13 69 20 60 60 2 2 35 1.20 64760--64825 24 2.7 25 78 17 77 69 0 1 28 0.97 64766--64799 17 2.0 17 100 0 68 76 0 0 23 0.79 64889--64947 27 2.2 27 81 6 66 33 6 0 59 1.24 64904--64942 19 2.1 19 95 0 69 28 5 0 66 1.12 64944--65099 34 4.4 37 78 14 111 45 0 6 47 1.33 64972--65081 34 3.2 34 81 10 127 45 0 5 49 1.25 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 64982--65099 18 6.7 19 77 18 114 46 0 4 49 1.21 67692--67719 14 2.0 14 100 0 56 35 21 7 35 1.81 69491--69532 2 22.0 2 90 9 70 47 0 0 52 1.00 71513--71549 18 2.0 19 89 5 58 78 0 0 21 0.75 71544--71569 12 2.2 12 100 0 52 61 7 7 23 1.49 71518--71596 21 3.8 21 76 15 67 65 5 3 25 1.30 71576--71611 17 2.1 17 94 0 63 58 5 2 33 1.36 71703--71812 40 2.7 40 97 1 202 60 0 14 24 1.34 71703--71816 60 1.9 61 90 1 185 60 0 15 23 1.35 71703--71815 20 5.6 20 87 1 163 61 0 15 23 1.34 74219--74258 21 1.9 21 89 0 62 37 27 7 27 1.84 74772--74818 10 4.9 10 89 10 80 51 0 0 48 1.00 74755--74818 18 3.7 18 82 14 89 50 0 0 50 1.00 74755--74810 8 6.8 8 86 13 62 50 0 0 50 1.00 88218--88281 21 3.0 21 100 0 128 53 23 4 18 1.64 88225--88288 21 3.3 19 89 10 87 51 21 4 21 1.66 88294--88341 22 2.1 24 85 14 66 31 0 0 68 0.90 88961--88995 16 2.1 17 89 5 54 25 8 14 51 1.70 92841--92870 15 2.0 15 100 0 60 53 6 26 13 1.64 95459--95544 24 3.7 24 81 9 115 15 24 12 47 1.80 95479--95550 21 3.3 21 80 12 83 13 25 11 50 1.75 95459--95550 45 2.1 45 95 2 168 14 23 11 50 1.76 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 97913--97986 15 4.7 15 71 21 62 35 4 22 37 1.74 97920--98001 24 3.4 24 91 0 128 36 4 23 35 1.76 115905--115958 22 2.5 22 96 3 101 55 3 0 40 1.17 116691--116755 2 35.0 2 77 14 68 52 0 0 47 1.00 116691--116773 15 5.7 15 78 12 84 55 0 1 43 1.07 116875--116910 17 2.1 17 94 0 63 50 2 0 47 1.15 116875--116909 9 4.0 9 88 7 54 51 2 0 45 1.16 116928--117122 16 11.4 17 69 21 72 43 1 7 48 1.37 116936--116981 22 2.1 22 100 0 92 41 0 13 45 1.43 116914--117012 38 2.5 40 83 9 139 39 2 10 48 1.48 ----------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- --------- Tables: 1 2