NC_048982.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_048982.1 Canarium album chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 163347
Tables: 1
This is table 1 of 1 ( 58 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
454--480 11 2.5 11 100 0 54 44 0 0 55 0.99
598--629 14 2.2 15 94 5 57 68 12 6 12 1.37
6942--6966 12 2.1 12 100 0 50 16 24 0 60 1.36
8163--8199 18 2.1 18 94 0 65 13 24 0 62 1.31
9170--9199 12 2.5 12 94 0 51 36 6 0 56 1.26
9206--9252 13 3.6 13 80 8 60 38 8 8 44 1.65
9593--9664 27 2.7 27 82 6 76 16 16 0 66 1.25
11046--11091 18 2.6 17 89 6 65 56 4 2 36 1.31
15330--15360 14 2.2 14 94 0 53 16 3 12 67 1.35
16257--16287 14 2.2 14 100 0 62 32 0 12 54 1.38
29480--29510 16 1.9 16 100 0 62 45 6 12 35 1.68
30690--30714 13 1.9 13 100 0 50 24 0 24 52 1.48
33691--33728 19 2.0 19 94 0 67 10 28 7 52 1.64
38299--38336 13 3.2 12 89 10 53 47 2 7 42 1.46
38911--38939 15 1.9 15 100 0 58 68 0 13 17 1.20
59512--59536 12 2.1 12 100 0 50 52 16 0 32 1.44
60670--60886 18 12.1 18 100 0 434 33 22 22 22 1.97
63306--63364 24 2.5 24 97 0 109 38 10 11 38 1.76
68645--68678 11 3.1 11 91 0 50 29 5 5 58 1.45
69072--69099 14 2.0 14 100 0 56 35 28 7 28 1.84
70126--70156 15 2.1 15 100 0 62 74 0 12 12 1.08
71187--71225 21 1.9 21 94 5 71 30 25 10 33 1.89
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
73114--73165 26 2.0 26 100 0 104 53 0 7 38 1.30
73198--73264 22 3.0 22 95 0 125 53 8 23 13 1.68
74389--74555 15 11.1 15 100 0 334 33 26 6 33 1.82
75066--75096 14 2.2 14 100 0 62 58 6 6 29 1.48
75215--75263 22 2.2 23 96 3 91 30 8 4 57 1.47
84166--84194 13 2.1 14 93 6 51 20 6 0 72 1.07
85305--85340 18 2.0 18 100 0 72 50 5 0 44 1.25
85353--85395 21 2.0 21 100 0 86 23 9 18 48 1.76
90263--90298 18 2.0 18 100 0 72 27 16 27 27 1.97
94321--94346 12 2.2 12 100 0 52 34 7 34 23 1.83
94937--95013 18 4.3 18 88 0 109 27 14 29 28 1.95
103195--103231 18 2.1 18 100 0 74 21 10 5 62 1.48
103183--103242 29 2.1 29 87 0 84 23 10 6 60 1.52
103544--103588 20 2.2 20 100 0 90 51 8 6 33 1.59
111349--111414 32 2.1 32 97 0 123 40 24 9 25 1.84
114322--114369 24 2.0 24 95 0 87 50 20 10 18 1.76
116100--116201 33 3.1 33 100 0 204 45 14 2 37 1.61
117298--117351 27 2.0 27 96 0 99 48 11 12 27 1.76
117464--117512 21 2.3 21 96 0 89 61 12 8 18 1.55
118090--118127 18 2.1 18 100 0 76 44 15 15 23 1.85
122425--122458 15 2.1 17 89 10 54 5 11 0 82 0.83
122425--122458 16 2.2 15 89 5 50 5 11 0 82 0.83
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
124273--124310 19 2.0 19 100 0 76 47 0 26 26 1.52
124453--124493 20 2.0 20 85 0 55 14 9 0 75 1.04
133075--133112 18 2.1 18 100 0 76 23 15 15 44 1.85
133690--133738 21 2.3 21 96 0 89 18 8 12 61 1.55
133851--133904 27 2.0 27 96 0 99 27 12 11 48 1.76
135001--135102 33 3.1 33 100 0 204 37 2 14 45 1.61
136833--136880 24 2.0 24 95 0 87 18 10 20 50 1.76
139788--139853 32 2.1 32 97 0 123 25 9 24 40 1.84
147614--147658 20 2.2 20 100 0 90 33 6 8 51 1.59
147971--148007 18 2.1 18 100 0 74 62 5 10 21 1.48
147960--148019 29 2.1 29 87 0 84 60 6 10 23 1.52
156189--156265 18 4.3 18 88 0 109 28 29 14 27 1.95
156856--156881 12 2.2 12 100 0 52 23 34 7 34 1.83
160904--160939 18 2.0 18 100 0 72 27 27 16 27 1.97
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Tables: 1
The End!