NC_048983.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_048983.1 Garcinia pedunculata chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 157688
Tables: 1
This is table 1 of 1 ( 53 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
158--188 16 1.9 16 93 0 53 51 0 0 48 1.00
4562--4604 16 2.7 16 85 0 59 81 2 2 13 0.89
6599--6638 17 2.4 17 91 0 62 22 10 15 52 1.71
8479--8525 15 3.1 15 73 11 51 48 4 2 44 1.34
8708--8749 22 2.0 21 90 4 66 61 14 2 21 1.43
9825--9854 13 2.3 13 94 0 51 33 13 33 20 1.91
10314--10345 11 2.8 12 86 13 50 40 6 0 53 1.26
10560--10600 9 4.7 9 82 14 50 78 0 2 19 0.87
10836--10882 8 5.8 8 82 5 58 44 2 0 53 1.12
10830--10882 25 2.1 25 100 0 106 45 3 0 50 1.19
28560--28584 12 2.1 12 100 0 50 0 16 8 76 1.02
31506--31553 15 3.2 15 100 0 96 12 27 0 60 1.32
32553--32592 20 2.0 20 100 0 80 50 5 5 40 1.46
32553--32601 20 2.5 20 93 0 71 48 4 6 40 1.47
32885--32930 15 3.1 15 84 9 51 58 4 2 34 1.30
33686--33723 18 2.1 18 95 0 67 52 15 21 10 1.72
47056--47081 13 2.0 13 100 0 52 61 23 0 15 1.33
47584--47619 18 2.0 18 100 0 72 44 0 5 50 1.25
49372--49408 18 2.1 18 100 0 74 21 27 5 45 1.73
51557--51582 13 2.0 13 100 0 52 46 0 15 38 1.46
52119--52144 11 2.4 11 100 0 52 65 7 7 19 1.43
58325--58357 17 1.9 17 100 0 66 18 6 0 75 1.00
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
58327--58365 17 2.3 17 90 0 60 17 5 2 74 1.12
60857--60899 19 2.4 17 82 14 59 51 2 16 30 1.57
60865--60904 19 2.1 19 100 0 80 52 5 17 25 1.64
61851--61905 19 2.8 19 79 17 60 47 3 0 49 1.19
61853--61898 19 2.5 19 89 6 69 47 2 0 50 1.13
61850--61910 21 2.9 21 81 16 65 45 4 0 49 1.23
61938--61979 21 2.0 21 100 0 84 52 0 9 38 1.34
68775--68802 14 2.0 14 100 0 56 35 7 7 50 1.57
68915--68939 13 1.9 13 100 0 50 40 20 8 32 1.81
75545--75573 14 2.1 14 100 0 58 24 20 0 55 1.44
79470--79509 20 2.0 20 100 0 80 35 5 20 40 1.74
82227--82251 13 1.9 13 100 0 50 68 0 0 32 0.90
83586--83617 16 2.0 16 100 0 64 50 6 18 25 1.70
84647--84671 12 2.1 12 100 0 50 32 8 24 36 1.84
91006--91088 21 3.7 23 75 18 77 13 22 9 54 1.68
91028--91095 21 3.2 21 82 0 82 11 22 7 58 1.57
93457--93549 18 5.2 18 89 7 127 30 7 27 34 1.85
93457--93549 36 2.6 35 91 3 141 30 7 27 34 1.85
101699--101736 18 2.1 18 100 0 76 21 10 5 63 1.46
102073--102106 16 2.1 16 94 0 59 52 0 14 32 1.42
111475--111524 7 8.2 6 81 16 59 20 18 0 62 1.34
111476--111514 13 2.9 14 88 7 55 20 17 0 61 1.34
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
111476--111516 20 2.0 20 100 0 82 19 19 0 60 1.36
113755--113801 15 3.1 15 93 0 76 25 14 4 55 1.58
132163--132212 7 8.2 6 81 16 59 62 0 18 20 1.34
132163--132227 13 4.5 13 81 13 58 60 1 20 18 1.45
132171--132211 20 2.0 20 100 0 82 60 0 19 19 1.36
141581--141614 16 2.1 16 94 0 59 32 14 0 52 1.42
141951--141988 18 2.1 18 100 0 76 63 5 10 21 1.46
150138--150230 18 5.2 18 92 2 143 34 27 7 30 1.85
152593--152681 21 4.1 21 81 5 81 56 8 22 12 1.64
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Tables: 1
The End!