NC_049008.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_049008.1 Dalbergia odorifera isolate A voucher scbg1 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 156049
Tables: 1
This is table 1 of 1 ( 67 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
1539--1574 10 3.3 11 85 14 56 44 11 0 44 1.39
1766--1838 23 3.5 20 78 17 71 41 2 1 54 1.23
1776--1843 19 3.4 19 84 11 82 44 1 1 52 1.19
1786--1840 23 2.4 23 93 3 94 41 1 0 56 1.10
1776--1861 19 4.3 20 80 16 81 41 3 1 53 1.25
1841--1873 16 2.0 17 88 5 50 36 12 3 48 1.56
1870--1915 22 2.1 22 100 0 92 28 13 0 58 1.35
1887--1941 16 3.4 16 78 14 60 32 5 0 61 1.19
3898--3935 15 2.6 14 95 4 67 42 2 0 55 1.14
6616--6646 13 2.4 13 94 0 53 48 19 0 32 1.49
10278--10320 19 2.5 17 79 17 52 37 18 4 39 1.72
10286--10324 19 2.1 19 100 0 78 35 15 10 38 1.81
14237--14277 14 2.9 14 100 0 82 65 19 0 14 1.26
17776--17803 13 2.2 13 100 0 56 64 7 7 21 1.43
25053--25099 21 2.2 21 96 0 85 36 4 14 44 1.65
34103--34140 18 2.1 18 90 0 58 44 10 7 36 1.68
49168--49198 16 1.9 16 93 0 53 48 12 3 35 1.58
52241--52280 19 2.1 19 100 0 80 40 5 5 50 1.46
52450--52479 12 2.5 12 100 0 60 26 16 0 56 1.40
52506--52563 19 2.9 21 85 10 68 44 10 0 44 1.38
52607--52694 15 5.7 15 69 25 51 52 1 6 39 1.36
52607--52676 25 2.8 25 78 8 81 52 1 5 40 1.34
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
52632--52717 37 2.4 37 82 9 97 50 1 8 40 1.40
53950--53976 12 2.2 12 100 0 54 59 0 7 33 1.25
53974--54014 19 2.2 19 86 0 55 53 0 7 39 1.29
54351--54387 19 1.9 19 100 0 74 43 10 16 29 1.82
56039--56080 20 2.1 20 100 0 84 45 0 9 45 1.36
59804--59830 14 1.9 14 100 0 54 40 0 0 59 0.98
59824--59881 24 2.4 25 76 5 64 24 5 0 70 1.07
61339--61374 17 2.1 17 100 0 72 36 5 0 58 1.22
62234--62274 20 2.0 20 100 0 82 48 14 0 36 1.44
64219--64276 25 2.4 25 79 2 73 48 10 3 37 1.54
65922--65956 9 4.1 8 86 13 52 25 2 0 71 1.00
65922--65956 17 2.1 17 89 10 54 25 2 0 71 1.00
65948--65984 16 2.3 15 90 9 56 24 5 5 64 1.36
68823--68852 15 2.0 15 93 0 51 56 0 6 36 1.26
70569--70632 24 2.7 24 78 7 67 32 1 0 65 1.02
80963--80997 16 2.1 17 94 5 63 40 11 0 48 1.39
82291--82336 2 25.0 2 79 16 55 50 2 0 47 1.13
82276--82332 23 2.5 23 88 2 89 50 1 0 47 1.11
82279--82333 10 5.2 10 78 20 58 50 1 0 47 1.11
85392--85440 25 2.0 25 100 0 98 59 12 4 24 1.50
90859--90928 21 3.3 21 83 0 86 11 24 7 57 1.59
93280--93316 18 2.1 18 100 0 74 32 5 27 35 1.79
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
100389--100424 18 2.0 18 100 0 72 27 11 5 55 1.57
110884--110913 14 2.1 14 93 0 51 43 3 6 46 1.46
110931--110966 18 2.0 18 100 0 72 44 5 11 38 1.63
110996--111031 18 2.0 18 100 0 72 61 11 11 16 1.57
114770--114804 18 2.0 17 88 5 52 31 11 2 54 1.51
114861--114911 11 4.2 12 73 14 50 37 3 0 58 1.16
116595--116632 20 2.0 20 85 10 53 7 5 7 78 1.07
120157--120208 18 2.7 19 91 8 79 57 0 0 42 0.98
120314--120402 20 4.3 20 81 9 117 44 0 0 55 0.99
120322--120380 21 2.5 24 76 18 79 45 0 0 54 0.99
120317--120395 41 1.9 41 89 5 124 44 0 0 55 0.99
120327--120382 26 2.1 28 90 6 89 42 0 0 57 0.99
120335--120395 15 4.3 15 70 16 58 44 0 0 55 0.99
120510--120534 13 1.9 13 100 0 50 56 0 4 40 1.18
120573--120623 24 2.1 25 85 3 68 78 0 0 21 0.75
120579--120647 25 2.9 24 74 8 61 81 0 4 14 0.84
130826--130861 18 2.0 18 100 0 72 16 11 11 61 1.57
130891--130926 18 2.0 18 100 0 72 38 11 5 44 1.63
130944--130973 14 2.1 14 93 0 51 46 6 3 43 1.46
141433--141468 18 2.0 18 100 0 72 55 5 11 27 1.57
148541--148577 18 2.1 18 100 0 74 35 27 5 32 1.79
150947--150998 21 2.5 21 90 0 86 59 9 21 9 1.57
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
150962--151018 24 2.5 22 83 8 62 56 12 17 14 1.68
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Tables: 1
The End!