NC_049084.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_049084.1 Pterocarpus santalinus isolate TXZT chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 158966
Tables: 1
This is table 1 of 1 ( 71 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
1944--1985 17 2.7 15 86 13 66 47 11 7 33 1.68
1947--1981 17 2.1 17 100 0 70 48 11 5 34 1.63
4726--4756 15 2.1 15 100 0 62 41 6 0 51 1.27
4764--4816 20 2.7 20 90 0 88 41 5 3 49 1.44
4852--4893 18 2.4 18 92 4 68 38 14 11 35 1.83
4900--4948 26 1.9 25 84 12 64 67 4 4 24 1.26
4964--4997 17 1.9 18 94 5 61 76 0 5 17 0.98
10340--10380 20 2.0 20 100 0 82 39 14 9 36 1.79
10424--10463 15 2.6 16 84 15 57 35 12 5 47 1.63
11924--11949 12 2.2 12 100 0 52 65 15 0 19 1.27
12894--12942 18 2.7 18 96 0 89 69 8 8 14 1.36
15313--15343 13 2.5 13 94 5 55 51 6 0 41 1.27
18508--18541 17 2.0 17 100 0 68 52 11 5 29 1.61
19182--19273 23 3.8 23 74 22 89 16 6 4 72 1.21
19165--19239 32 2.3 31 82 8 87 16 6 2 74 1.14
19230--19286 23 2.4 23 91 8 89 17 3 5 73 1.16
19300--19331 15 2.1 15 100 0 64 34 6 0 59 1.23
25427--25468 19 2.1 20 91 8 68 33 4 2 59 1.31
25427--25463 19 1.9 19 100 0 74 35 5 0 59 1.20
25744--25769 13 2.0 13 100 0 52 53 23 0 23 1.46
31969--32001 17 2.0 16 94 5 57 57 0 0 42 0.98
32072--32096 13 1.9 13 100 0 50 60 0 16 24 1.36
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
33186--33227 18 2.3 18 87 0 57 30 11 2 54 1.49
48109--48139 16 1.9 16 93 0 53 90 3 6 0 0.55
49152--49217 22 2.8 23 86 13 75 60 6 10 22 1.51
49174--49217 22 2.0 22 100 0 88 63 4 9 22 1.42
56428--56469 20 2.1 20 95 0 75 45 21 2 30 1.65
57094--57133 20 2.0 20 95 0 71 47 5 7 40 1.54
61817--61858 13 3.1 13 81 18 50 45 2 0 52 1.13
61818--61859 15 2.9 15 80 13 52 47 2 0 50 1.14
62008--62037 11 2.7 11 94 0 51 40 10 0 50 1.36
63319--63370 26 2.0 26 100 0 104 19 15 7 57 1.62
68335--68377 21 2.0 21 86 4 59 32 4 0 62 1.15
71050--71074 12 2.1 12 100 0 50 32 8 0 60 1.26
72819--72866 2 24.0 2 82 0 60 41 8 0 50 1.33
72819--72866 12 3.8 12 89 10 78 41 8 0 50 1.33
83127--83192 24 2.7 24 76 21 66 48 1 4 45 1.32
84524--84574 3 16.3 3 77 22 52 33 0 0 66 0.92
84516--84574 17 3.3 18 90 9 95 35 0 0 64 0.94
84643--84682 19 2.2 18 86 4 53 47 2 0 50 1.14
84647--84685 15 2.6 15 84 8 53 48 5 0 46 1.24
93521--93588 21 3.2 21 82 0 82 11 22 7 58 1.57
95934--95988 18 3.1 18 100 0 110 32 5 27 34 1.80
95934--95988 9 6.1 9 76 0 56 32 5 27 34 1.80
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
103268--103300 11 3.0 11 91 8 50 9 0 0 90 0.44
103257--103300 15 2.9 15 89 0 61 11 2 0 86 0.66
103796--103830 6 6.2 6 87 12 56 34 0 17 48 1.47
103797--103834 11 3.5 11 96 3 69 34 0 18 47 1.49
116657--116692 19 1.9 18 88 5 54 63 2 5 27 1.30
116657--116708 26 2.0 26 96 0 95 63 3 7 25 1.38
117045--117073 14 2.1 14 100 0 58 86 0 6 6 0.72
117890--117944 2 30.0 2 82 17 75 47 0 0 52 1.00
117890--117944 9 6.0 10 82 18 75 47 0 0 52 1.00
118298--118341 22 2.0 22 100 0 88 50 9 13 27 1.72
119424--119449 12 2.2 12 100 0 52 50 7 15 26 1.71
119445--119494 22 2.2 23 92 7 93 48 4 8 40 1.51
123311--123336 1 26.0 1 100 0 52 100 0 0 0 0.00
123433--123498 25 2.6 25 85 4 89 54 3 1 40 1.25
123459--123483 10 2.5 10 100 0 50 52 8 0 40 1.31
123467--123501 15 2.4 14 86 9 52 62 2 2 31 1.24
125131--125160 12 2.6 12 94 5 53 0 6 0 93 0.35
125645--125677 16 2.1 16 94 0 57 51 18 3 27 1.60
143596--143630 6 6.2 6 87 12 56 48 17 0 34 1.47
143592--143629 11 3.5 11 96 3 69 47 18 0 34 1.49
143592--143635 22 2.0 21 86 4 61 50 15 2 31 1.57
144126--144169 15 2.9 15 89 3 61 86 0 2 11 0.66
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
144126--144158 11 3.1 11 91 4 50 90 0 0 9 0.44
151438--151492 18 3.1 18 100 0 110 34 27 5 32 1.80
151438--151492 9 6.1 9 76 0 56 34 27 5 32 1.80
153839--153907 21 3.3 21 83 2 86 57 7 23 11 1.58
153871--153927 24 2.5 22 83 8 62 56 12 17 14 1.68
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Tables: 1
The End!