NC_049086.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_049086.1 Oroxylum indicum chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 162123
Tables: 1
This is table 1 of 1 ( 118 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
6478--6551 14 5.3 14 100 0 148 44 13 6 35 1.70
6719--6748 14 2.2 14 94 5 53 30 10 6 53 1.60
7186--7230 14 3.0 14 82 17 63 33 0 22 44 1.53
7186--7228 17 2.8 15 86 13 61 34 0 18 46 1.50
9153--9185 16 2.1 16 100 0 66 57 0 6 36 1.23
13145--13171 13 2.1 13 100 0 54 37 22 0 40 1.54
14993--15017 12 2.1 12 100 0 50 24 8 8 60 1.52
15958--15997 19 2.1 19 90 0 62 42 12 7 37 1.71
17041--17068 14 2.0 14 100 0 56 35 21 0 42 1.53
27800--27834 17 2.1 17 100 0 70 40 5 0 54 1.24
28363--28397 17 2.1 17 100 0 70 51 17 11 20 1.75
29564--29594 15 2.1 15 100 0 62 38 6 12 41 1.69
30374--30411 18 2.1 18 100 0 76 44 10 10 34 1.73
30432--30464 15 2.2 15 100 0 66 27 6 18 48 1.71
30502--30527 13 2.0 13 100 0 52 38 7 15 38 1.76
31412--31491 20 4.0 20 100 0 160 30 10 15 45 1.78
32099--32124 13 2.0 13 100 0 52 38 23 0 38 1.55
32418--32452 15 2.3 15 90 0 52 42 5 14 37 1.69
32425--32454 15 2.0 15 100 0 60 40 6 20 33 1.78
43194--43241 18 2.5 19 80 10 62 66 14 0 18 1.25
43199--43247 18 3.1 16 83 16 66 65 12 0 22 1.26
46209--46245 18 2.1 18 100 0 74 21 21 0 56 1.42
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
47078--47107 15 2.0 15 100 0 60 40 0 13 46 1.43
48426--48461 18 2.0 18 100 0 72 44 5 27 22 1.75
56344--56377 16 2.1 16 100 0 68 32 5 17 44 1.73
58421--58463 13 3.7 13 71 28 51 23 16 0 60 1.35
58421--58460 21 1.9 21 100 0 80 22 17 0 60 1.37
59095--59209 15 7.7 15 75 0 104 31 22 19 26 1.98
59087--59215 30 4.3 30 96 0 240 30 24 18 26 1.98
59205--59379 42 4.2 42 95 0 305 18 25 16 39 1.91
59200--59355 21 7.4 21 72 8 129 20 23 16 39 1.91
59211--59376 21 7.9 21 71 9 115 19 23 16 40 1.91
59388--59584 30 6.4 30 78 9 207 27 24 19 28 1.98
59347--59554 96 2.2 96 93 0 353 26 25 18 29 1.98
59485--59563 15 5.3 15 71 0 68 29 24 20 26 1.99
59494--59573 15 5.3 15 72 0 79 31 23 20 25 1.98
59580--59664 21 4.0 21 81 6 118 16 30 17 35 1.92
59659--59722 30 2.1 30 100 0 128 26 29 17 26 1.97
59659--59737 30 2.6 30 91 0 113 27 27 17 26 1.98
61071--61118 24 2.0 24 100 0 96 37 8 12 41 1.73
61693--61736 21 2.1 21 100 0 88 34 13 9 43 1.76
61751--61796 21 2.2 21 96 0 83 34 21 13 30 1.91
65684--65717 17 2.0 17 100 0 68 52 5 11 29 1.61
69823--69869 21 2.3 21 92 3 78 59 4 8 27 1.45
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
69947--70113 21 8.0 21 94 0 280 28 29 8 32 1.88
73676--73713 17 2.2 17 95 0 67 18 2 10 68 1.30
73740--73869 35 3.6 37 84 8 178 50 4 7 36 1.52
73751--73845 12 7.8 12 69 11 68 49 5 9 35 1.58
73738--73966 35 6.6 35 75 11 159 53 3 6 36 1.45
73933--73993 23 2.7 23 84 0 86 54 3 4 37 1.39
73983--74013 15 2.1 15 100 0 62 61 12 12 12 1.58
74083--74180 29 3.3 29 77 13 119 60 3 6 30 1.36
74208--74266 23 2.6 23 74 15 59 59 1 0 38 1.08
74690--74721 14 2.3 14 94 0 55 21 12 9 56 1.64
81525--81573 21 2.3 22 96 3 91 22 0 16 61 1.34
81969--82034 24 2.8 24 100 0 132 34 27 13 24 1.93
82393--82455 21 3.0 21 100 0 126 19 23 9 47 1.78
86429--86453 12 2.1 12 100 0 50 8 0 8 84 0.79
86754--86778 12 2.1 12 100 0 50 0 0 8 92 0.40
87364--87413 25 2.0 25 96 0 91 40 18 12 30 1.86
88671--88714 22 2.0 22 90 0 70 45 13 4 36 1.64
88701--88777 20 3.9 20 84 3 111 48 15 6 29 1.70
88726--88786 19 3.2 19 81 4 86 47 13 8 31 1.71
88710--88786 39 2.0 39 100 0 154 46 14 7 31 1.72
89056--89128 16 4.8 15 73 15 69 63 4 1 31 1.22
89051--89090 12 3.2 12 83 13 53 65 0 0 35 0.93
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
89054--89130 14 5.6 14 71 18 54 62 3 1 32 1.22
89081--89150 34 2.0 35 94 2 124 57 7 2 32 1.41
91110--91171 21 2.7 24 69 19 60 12 24 9 53 1.69
93521--93565 18 2.5 18 92 0 72 31 11 24 33 1.90
94810--95064 21 12.0 21 86 7 336 36 7 41 14 1.74
94828--94884 6 9.5 6 98 0 105 35 0 50 14 1.42
95017--95055 6 6.5 6 96 0 69 35 0 51 12 1.40
101526--101559 15 2.3 15 100 0 68 32 0 20 47 1.51
101531--101580 17 3.0 18 88 11 72 30 0 22 48 1.51
109543--109603 31 2.0 31 90 0 95 39 22 9 27 1.86
110934--111226 5 59.0 5 68 23 113 57 6 6 30 1.48
110930--111187 35 7.5 35 70 20 204 56 6 6 30 1.50
110944--111221 25 9.9 25 75 21 241 57 6 6 29 1.49
110930--111212 85 3.2 85 85 7 377 56 6 6 30 1.51
110969--111212 60 4.1 60 98 0 470 56 6 6 29 1.50
111293--111334 12 3.6 12 81 18 61 61 0 26 11 1.30
111293--111338 23 2.0 23 100 0 92 60 0 26 13 1.32
111466--111500 17 2.1 17 100 0 70 34 11 5 48 1.63
111566--111616 16 3.1 16 85 2 66 19 11 7 60 1.55
111574--111648 17 4.8 17 75 20 74 18 13 8 60 1.57
111602--111655 11 5.4 11 75 20 64 20 14 7 57 1.61
111585--111656 28 2.6 28 93 0 117 20 13 8 56 1.63
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
113857--113893 18 2.1 18 100 0 74 16 10 10 62 1.55
128384--128426 21 2.0 21 100 0 86 23 20 9 46 1.79
134647--134683 18 2.1 18 100 0 74 62 10 10 16 1.55
136885--136938 11 5.4 11 75 20 64 57 7 14 20 1.61
136896--136966 17 4.6 16 73 21 71 59 7 14 19 1.58
136884--136955 28 2.6 28 93 0 117 56 8 13 20 1.63
136924--136974 16 3.1 16 85 2 66 60 7 11 19 1.55
137040--137074 17 2.1 17 100 0 70 48 5 11 34 1.63
137206--137247 12 3.6 12 81 18 61 11 26 0 61 1.30
137202--137247 23 2.0 23 100 0 92 13 26 0 60 1.32
137319--137511 25 6.9 25 73 21 161 29 6 6 57 1.49
137353--137546 35 6.1 34 76 22 190 30 6 6 57 1.48
137508--137596 25 3.6 25 96 0 160 29 6 5 58 1.47
137388--137610 85 2.6 87 91 5 350 30 6 6 56 1.51
137328--137571 60 4.1 60 98 0 470 29 6 6 56 1.50
146960--147009 17 3.0 18 86 13 72 48 22 0 30 1.51
146981--147014 15 2.3 15 100 0 68 47 20 0 32 1.51
153476--153730 21 12.0 21 86 7 336 14 41 7 36 1.74
153485--153523 6 6.5 6 96 0 69 12 51 0 35 1.40
153656--153712 6 9.5 6 98 0 105 14 50 0 35 1.42
154975--155019 18 2.5 18 92 0 72 33 24 11 31 1.90
159390--159459 34 2.0 35 94 2 124 32 2 7 57 1.41
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
159450--159489 12 3.2 12 83 13 53 35 0 0 65 0.93
159412--159484 16 4.8 15 73 15 69 31 1 4 63 1.22
159763--159839 20 3.9 20 84 3 111 29 6 15 48 1.70
159754--159830 39 2.0 39 100 0 154 31 7 14 46 1.72
159754--159814 19 3.2 19 81 4 86 31 8 13 47 1.71
161127--161176 25 2.0 25 96 0 91 30 12 18 40 1.86
161762--161786 12 2.1 12 100 0 50 92 8 0 0 0.40
162087--162111 12 2.1 12 100 0 50 84 8 0 8 0.79
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Tables: 1
The End!