NC_050051.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_050051.1 Agrimonia pilosa chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 155188
Tables: 1
This is table 1 of 1 ( 37 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
143--180 19 2.0 19 100 0 76 42 21 0 36 1.53
4421--4462 18 2.3 19 91 8 77 38 9 4 47 1.57
5771--5837 33 2.0 33 88 0 98 25 13 19 41 1.88
6534--6560 13 2.1 13 100 0 54 55 7 0 37 1.28
8237--8263 13 2.1 13 100 0 54 51 7 0 40 1.30
8428--8472 11 4.0 11 85 5 63 37 4 8 48 1.55
8428--8473 23 2.0 23 100 0 92 39 4 8 47 1.54
28079--28112 17 2.0 17 100 0 68 35 0 23 41 1.55
30213--30238 13 2.0 13 100 0 52 46 7 0 46 1.31
36002--36035 17 2.0 17 94 0 59 52 5 14 26 1.64
36752--36819 10 6.1 10 73 21 55 47 1 5 45 1.36
45174--45203 14 2.1 14 100 0 60 56 6 6 30 1.51
46759--46829 35 2.0 35 97 0 133 47 1 9 40 1.45
46992--47033 20 2.1 20 100 0 84 21 14 0 64 1.29
47240--47264 12 2.1 12 100 0 50 44 0 8 48 1.32
51479--51532 21 2.7 20 85 5 81 44 3 3 48 1.38
52367--52402 18 2.0 18 100 0 72 44 22 5 27 1.75
54827--54883 17 3.4 17 97 0 105 49 12 7 31 1.67
54836--54882 8 5.6 8 80 9 58 51 12 6 29 1.65
65512--65546 17 2.1 17 94 0 61 37 5 8 48 1.58
69633--69662 15 2.0 15 100 0 60 33 0 6 60 1.23
70491--70517 13 2.1 13 100 0 54 62 7 0 29 1.22
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
72439--72470 16 2.0 16 93 0 55 50 6 9 34 1.60
74594--74629 18 2.0 18 100 0 72 38 5 11 44 1.63
81272--81364 31 3.0 31 100 0 186 58 0 22 19 1.40
83743--83795 21 2.5 22 90 9 92 7 26 9 56 1.57
89304--89355 21 2.5 21 87 6 79 9 19 9 61 1.54
91740--91776 18 2.1 18 100 0 74 32 5 27 35 1.79
107891--107952 32 1.9 32 96 0 115 38 20 11 29 1.88
108975--109002 14 2.0 14 100 0 56 42 21 7 28 1.79
114907--114960 26 2.1 26 96 0 99 35 9 3 51 1.52
124250--124281 16 2.0 16 93 0 55 31 3 12 53 1.54
130697--130734 14 2.6 15 83 8 51 28 13 15 42 1.85
130708--130735 14 2.0 14 100 0 56 28 7 21 42 1.79
131758--131819 32 1.9 32 96 0 115 29 11 20 38 1.88
147934--147970 18 2.1 18 100 0 74 35 27 5 32 1.79
150355--150406 21 2.5 21 87 6 79 61 9 19 9 1.54
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Tables: 1
The End!