NC_050292.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_050292.1 Saposhnikovia divaricata chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 147834
Tables: 1
This is table 1 of 1 ( 52 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4601--4631 13 2.4 13 100 0 62 58 6 12 22 1.58
6106--6133 14 2.0 14 100 0 56 35 21 0 42 1.53
7111--7147 16 2.3 16 100 0 74 54 5 13 27 1.61
9845--9879 15 2.4 15 95 4 63 54 5 0 40 1.24
13163--13188 13 2.0 13 100 0 52 76 0 0 23 0.78
16561--16586 10 2.6 10 100 0 52 34 11 7 46 1.69
16607--16632 13 2.0 13 100 0 52 53 7 15 23 1.67
20776--20872 49 2.0 49 89 0 149 29 17 20 31 1.96
27788--27814 14 1.9 14 100 0 54 37 0 11 51 1.37
31758--31787 15 2.0 15 100 0 60 53 0 6 40 1.27
32734--32764 13 2.4 13 88 0 53 3 6 0 90 0.55
32932--32969 18 2.1 18 100 0 76 44 5 10 39 1.61
36750--36787 19 2.0 19 100 0 76 36 0 10 52 1.36
51910--51954 11 4.3 11 75 18 51 40 0 0 60 0.97
51915--51955 9 4.7 9 81 6 57 41 0 0 58 0.98
51912--51954 15 2.9 15 87 12 63 39 0 0 60 0.97
51908--51955 17 2.9 17 93 6 82 39 0 0 60 0.97
51912--51936 13 1.9 13 100 0 50 40 0 0 60 0.97
51913--51982 24 3.0 24 79 10 65 44 1 1 52 1.18
51917--51967 26 2.0 26 84 7 68 43 0 1 54 1.11
60727--60755 14 2.1 14 100 0 58 34 0 13 51 1.42
62583--62609 14 1.9 14 100 0 54 40 14 7 37 1.74
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
64144--64168 13 1.9 13 100 0 50 44 0 0 56 0.99
64147--64171 11 2.3 11 100 0 50 44 0 0 56 0.99
67923--67971 24 2.0 24 100 0 98 44 8 12 34 1.71
68403--68451 24 2.0 24 92 0 80 46 8 4 40 1.52
68542--68582 21 2.0 21 85 0 55 26 26 9 36 1.88
74827--74863 19 1.9 19 94 0 65 54 13 8 24 1.66
83214--83255 20 2.1 20 100 0 84 33 7 14 45 1.72
89011--89078 21 3.2 21 77 8 75 11 22 8 57 1.61
90174--90217 15 2.9 15 93 0 70 27 34 13 25 1.93
91434--91535 18 5.7 18 98 0 186 28 8 27 35 1.87
94004--94068 21 3.1 21 97 0 121 41 4 36 16 1.70
99906--99968 21 3.0 21 100 0 126 14 23 14 47 1.80
103274--103314 20 2.0 20 100 0 82 51 14 29 4 1.63
107944--108009 32 2.1 32 97 0 123 40 24 9 25 1.84
108316--108343 14 2.0 14 100 0 56 78 0 7 14 0.95
111868--111910 17 2.5 17 96 3 77 51 0 0 48 1.00
114351--114404 18 3.2 18 71 28 64 37 5 9 48 1.59
115462--115488 14 1.9 14 100 0 54 48 0 7 44 1.31
115669--115725 2 29.5 2 81 13 66 47 0 1 50 1.11
115664--115698 17 2.1 17 94 0 61 37 2 0 60 1.12
115669--115723 19 2.8 19 86 5 74 47 0 1 50 1.11
115670--115725 15 3.8 15 83 11 71 48 0 1 50 1.11
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
119673--119708 18 2.0 18 100 0 72 38 16 0 44 1.48
119812--119836 12 2.1 12 100 0 50 48 0 8 44 1.32
122641--122672 15 2.1 15 100 0 64 28 0 0 71 0.86
132694--132721 14 2.0 14 100 0 56 14 7 0 78 0.95
133028--133093 32 2.1 32 97 0 123 25 9 24 40 1.84
137723--137763 20 2.0 20 100 0 82 4 29 14 51 1.63
141069--141131 21 3.0 21 100 0 126 47 14 23 14 1.80
146969--147033 21 3.1 21 97 0 121 16 36 4 41 1.70
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Tables: 1
The End!