NC_050348.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_050348.1 Kadsura interior chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 153201
Tables: 1
This is table 1 of 1 ( 22 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
1588--1612 12 2.1 12 100 0 50 36 16 0 48 1.46
15231--15256 2 13.0 2 100 0 52 50 0 0 50 1.00
21731--21770 20 2.0 20 100 0 80 15 15 35 35 1.88
24316--24344 14 2.0 15 93 6 51 27 13 17 41 1.87
24672--24705 17 2.0 17 100 0 68 23 35 5 35 1.79
29651--29681 15 2.1 15 100 0 62 35 6 25 32 1.82
33898--33939 14 3.0 14 100 0 84 50 0 28 21 1.49
55894--55923 15 1.9 16 93 6 53 50 6 13 30 1.67
58516--58574 19 3.1 19 97 0 109 28 23 10 37 1.88
59739--59764 12 2.2 12 100 0 52 50 7 0 42 1.31
60503--60536 15 2.3 15 89 0 50 41 8 5 44 1.60
67069--67119 17 3.0 17 100 0 102 52 17 23 5 1.66
79926--79973 24 2.0 24 91 0 78 27 35 10 27 1.89
92001--92127 24 5.0 24 83 11 155 33 5 31 29 1.80
92030--92118 30 3.2 30 86 10 118 33 6 31 28 1.83
94412--94441 14 2.1 14 100 0 60 43 20 6 30 1.77
98935--98968 13 2.6 13 95 0 59 26 8 0 64 1.22
108882--108947 18 3.4 18 69 25 53 36 13 21 28 1.91
130029--130094 18 3.4 18 69 25 53 28 21 13 36 1.91
140008--140041 13 2.6 13 95 0 59 64 0 8 26 1.22
144535--144564 14 2.1 14 100 0 60 30 6 20 43 1.77
146849--146975 24 5.0 24 83 11 155 29 31 5 33 1.80
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Tables: 1
The End!