NC_050857.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_050857.1 Lophatherum gracile voucher jlq140 plastid, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 140595
Tables: 1
This is table 1 of 1 ( 36 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
3746--3770 13 1.9 13 100 0 50 88 0 8 4 0.64
4801--4836 18 2.0 18 100 0 72 33 11 11 44 1.75
6762--6788 13 2.1 13 100 0 54 51 22 0 25 1.48
16059--16091 16 2.1 16 100 0 66 48 6 24 21 1.72
16115--16244 67 1.9 67 93 0 224 30 15 24 29 1.96
16253--16290 9 4.1 9 93 6 67 52 10 0 36 1.36
16252--16291 19 2.1 19 100 0 80 50 10 0 40 1.36
19121--19150 15 2.0 15 100 0 60 53 6 20 20 1.67
21378--21404 13 2.1 13 100 0 54 51 7 7 33 1.58
26996--27036 21 2.0 21 100 0 82 26 29 14 29 1.95
27889--27917 15 1.9 15 100 0 58 27 34 17 20 1.95
28962--29024 21 3.0 21 85 0 81 41 14 31 12 1.83
29028--29124 42 2.3 42 78 7 108 39 14 30 15 1.87
29112--29294 33 5.3 32 69 18 109 42 14 28 14 1.85
28969--29216 117 2.1 117 81 3 293 40 15 30 13 1.86
38132--38165 16 2.1 16 100 0 68 23 0 11 64 1.26
48399--48444 13 3.8 13 77 16 62 56 0 8 34 1.30
48400--48448 23 2.2 21 89 10 80 59 0 6 34 1.22
48405--48450 23 2.0 23 100 0 92 56 0 8 34 1.30
50353--50420 33 2.0 34 94 2 120 29 14 14 41 1.86
52765--52796 15 2.1 15 94 0 55 37 0 12 50 1.41
52829--52859 15 2.1 15 100 0 62 58 9 19 12 1.62
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
53913--53983 11 6.3 12 74 21 73 60 19 0 19 1.36
53908--53976 33 2.1 33 97 0 129 60 18 0 20 1.36
53938--53984 22 2.1 22 100 0 94 59 23 0 17 1.37
60293--60326 17 2.0 17 100 0 68 23 11 11 52 1.70
62586--62644 28 2.1 28 100 0 118 44 10 23 22 1.83
66341--66378 18 2.1 18 100 0 76 28 10 15 44 1.80
67705--67829 21 6.0 21 81 7 155 38 24 5 31 1.79
67709--67829 42 2.9 42 87 2 172 38 24 5 30 1.79
68117--68175 21 2.8 21 75 10 66 49 22 10 18 1.77
70649--70737 44 2.0 44 97 0 169 28 29 16 25 1.97
73828--73852 11 2.3 11 100 0 50 92 0 8 0 0.40
78542--78583 18 2.3 18 91 0 66 7 14 2 76 1.10
107773--107811 18 2.2 18 100 0 78 48 15 5 30 1.66
109669--109698 15 2.0 15 100 0 60 13 6 20 60 1.55
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Tables: 1
The End!