NC_050924.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_050924.1 Stephania tetrandra chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 159974
Tables: 1
This is table 1 of 1 ( 61 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
318--358 20 2.0 20 100 0 82 39 0 19 41 1.52
2055--2086 14 2.3 14 94 0 55 21 3 0 75 0.95
2109--2137 11 2.6 11 100 0 58 48 0 13 37 1.43
2144--2209 21 3.0 22 91 8 107 50 0 15 34 1.44
4229--4254 12 2.2 12 100 0 52 50 15 7 26 1.71
5245--5284 20 2.0 20 100 0 80 55 15 0 30 1.41
7122--7147 12 2.2 12 100 0 52 19 7 7 65 1.43
8118--8156 20 2.0 20 94 0 69 35 10 7 46 1.67
9325--9353 14 2.1 14 100 0 58 27 13 13 44 1.82
9517--9548 15 2.1 15 94 0 55 71 0 9 18 1.12
9896--9954 26 2.3 26 91 2 93 50 1 8 38 1.43
15648--15713 33 2.0 33 100 0 132 30 12 18 39 1.87
30048--30085 19 2.0 19 89 0 58 34 13 7 44 1.72
34381--34484 17 5.9 17 72 13 52 37 9 2 50 1.50
34446--34481 17 2.1 17 100 0 72 41 5 5 47 1.50
35003--35036 2 16.5 2 87 6 50 52 0 2 44 1.16
36388--36417 2 15.5 2 93 6 53 46 0 0 53 1.00
40419--40461 7 5.9 7 78 10 50 41 4 16 37 1.69
40419--40461 15 2.9 15 96 0 77 41 4 16 37 1.69
40419--40510 22 4.3 22 72 15 59 44 7 10 36 1.68
40476--40533 15 3.9 15 97 2 109 48 6 5 39 1.52
40741--40775 11 3.5 10 85 14 54 28 20 0 51 1.47
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
44848--44878 15 2.1 15 100 0 62 19 25 32 22 1.97
49331--49360 15 2.0 15 93 0 51 40 20 10 30 1.85
51578--51609 10 3.3 10 91 8 57 40 0 0 59 0.97
51700--51739 21 1.9 21 100 0 80 40 2 5 52 1.37
53469--53507 11 3.5 11 82 6 51 53 2 20 23 1.57
56307--56382 9 7.7 10 77 16 79 60 0 3 35 1.15
56307--56382 14 5.1 15 80 15 79 60 0 3 35 1.15
56304--56377 23 3.1 23 88 7 103 60 0 4 35 1.15
56307--56382 5 15.4 5 76 17 79 60 0 3 35 1.15
56309--56384 26 3.0 26 90 5 113 60 0 5 34 1.19
56404--56443 17 2.4 16 87 4 53 22 5 5 67 1.30
56645--56719 37 2.0 37 100 0 150 41 8 5 45 1.56
65126--65197 26 2.8 27 83 10 89 47 9 4 38 1.56
65130--65209 12 6.4 12 69 8 52 50 10 2 37 1.50
66669--66693 13 1.9 13 100 0 50 32 4 8 56 1.47
69386--69417 16 2.0 16 100 0 64 43 12 18 25 1.85
72845--72882 19 2.0 19 90 10 60 44 21 10 23 1.83
72984--73034 12 4.4 12 82 9 70 31 3 23 41 1.73
72992--73035 22 2.0 22 100 0 88 31 4 27 36 1.77
83976--84008 16 2.1 16 100 0 66 30 6 30 33 1.82
89036--89064 13 2.1 14 93 6 51 55 0 17 27 1.42
89764--89796 15 2.3 14 94 5 57 21 51 0 27 1.48
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
92773--92802 15 2.0 15 93 0 51 43 13 30 13 1.82
93027--93074 24 2.0 24 95 0 87 31 8 27 33 1.86
95002--95058 21 2.7 21 97 0 105 10 24 14 50 1.73
97450--97499 18 2.9 17 91 8 68 28 6 26 40 1.79
97460--97499 18 2.2 18 100 0 80 27 7 27 37 1.84
114888--114979 2 49.0 2 70 12 52 51 0 2 46 1.13
115039--115068 15 2.0 15 100 0 60 33 20 0 46 1.51
117597--117643 24 2.0 24 95 0 85 44 8 23 23 1.80
117830--117863 13 2.5 13 90 4 50 73 2 14 8 1.19
123515--123562 15 3.5 15 67 21 50 45 4 0 50 1.21
123513--123564 26 2.1 25 92 7 88 42 3 0 53 1.19
126817--126857 18 2.3 18 83 12 57 41 2 7 48 1.44
153015--153064 18 2.9 17 91 8 68 40 26 6 28 1.79
153015--153054 18 2.2 18 100 0 80 37 27 7 27 1.84
155456--155512 21 2.7 21 97 0 105 50 14 24 10 1.73
157440--157487 24 2.0 24 95 0 87 33 27 8 31 1.86
157712--157741 15 2.0 15 93 0 51 13 30 13 43 1.82
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Tables: 1
The End!