NC_050939.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_050939.1 Citrus medica chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 160031
Tables: 1
This is table 1 of 1 ( 31 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4722--4760 18 2.2 18 100 0 78 74 15 0 10 1.07
6603--6655 19 2.9 19 91 8 85 67 0 7 24 1.16
8988--9016 12 2.4 12 100 0 58 17 24 0 58 1.38
9041--9071 16 1.9 16 93 0 53 48 9 12 29 1.73
12582--12606 1 25.0 1 100 0 50 100 0 0 0 0.00
31585--31617 17 1.9 17 100 0 66 36 12 3 48 1.56
32928--32979 22 2.4 22 93 0 86 63 7 11 17 1.50
34231--34264 14 2.4 14 95 5 59 70 0 2 26 1.01
34426--34453 14 2.0 14 100 0 56 50 7 21 21 1.72
38955--38984 15 2.0 15 100 0 60 40 6 0 53 1.27
39083--39129 22 2.1 22 85 14 62 55 2 4 38 1.31
39099--39154 19 2.9 21 77 20 68 53 3 5 37 1.41
39540--39569 13 2.3 13 100 0 60 46 0 0 53 1.00
49699--49729 14 2.2 14 100 0 62 35 0 6 58 1.24
60916--60957 18 2.3 18 100 0 84 45 11 23 19 1.83
62401--62449 25 2.0 24 92 4 80 44 8 4 42 1.53
68920--68948 14 2.1 14 100 0 58 37 6 20 34 1.80
71839--71877 21 1.9 21 89 5 62 33 25 10 30 1.89
80969--80999 16 1.9 16 100 0 62 12 9 0 77 0.99
83502--83526 12 2.1 12 100 0 50 28 0 40 32 1.57
88671--88716 23 2.0 23 100 0 92 47 17 8 26 1.76
95303--95338 18 2.0 18 94 0 63 30 8 27 33 1.86
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
103093--103136 17 2.6 17 88 0 61 9 6 0 84 0.79
103635--103672 18 2.1 18 95 0 67 23 7 5 63 1.42
111767--111828 32 1.9 32 96 0 115 38 24 9 27 1.86
135680--135741 32 1.9 32 96 0 115 27 9 24 38 1.86
143836--143873 18 2.1 18 95 0 67 63 5 7 23 1.42
144372--144414 8 5.1 8 81 10 50 86 0 4 9 0.71
144372--144415 17 2.6 17 88 0 61 84 0 6 9 0.79
152170--152205 18 2.0 18 94 0 63 33 27 8 30 1.86
158792--158837 23 2.0 23 100 0 92 26 8 17 47 1.76
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Tables: 1
The End!